XLOC_004293


Basic Information

Item Value
gene id XLOC_004293
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38084872 ~ 38087013 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008853
cgattagccaatccgggcctggctaggggataaaatgaactaaggcaacatgatcattctacTAATTGTCAACTGCTAAGAAATCTTTTAAATACAACCCGACCCCCACtaagctcgctgaggcccccttgtgggccgggacCGCCCTGTTGGGAACTGCTGCTATAGAGTAAGGAGGTGGgaagtttctacaggtggtttatcaagcccactcacctgtgtgaagctcaTTACATAAATGCAGtagtttttgtgtgtttgagtgattgtaagaaagcgTCTGGTGCGAATGTACAAAGCTACATGGTGCAAGTCTCGATTAAGGTGTCAGAAAGATTAAgtgtatttatttgaatctcttaCTTTATCAGCTGAAaagtttaattacagtaactaaatTACTACACCCAACACTGACACATTTTTTCCCatatctctcattgtgttttcccatgtaaatataaaataagagcTAACAATCGATAGATAGTTTGCTTTTATATTATCGTACGTGCTACAGTAAAGAGCAACAAAGCTAACCAGTGTATCCGTAACAATTCTTATTCACCAGCAGCTCGCTTCAAAACACTGATCAAAGGCAGACTACTGCAAATATAACTAGATTAAACCTGCCGGCCTGTTAGCTAATCTAGTTTGTCTCTCTGATACAGAAAACTAGTTAATGCCAACATTATAAAAACATCGAAAAATGCCACAGCATGAGTGTCTGCGATGCCCTTGGAGAATCAACATcctaagaaaaagaaaaagtccTTCAGCACACAGTGTTTATATGTGTGCGCTTTAATAAGGTCTCCAATTTGACCTCCATCACCTCCGGCAGCATAATTGCATCCCACACAAATCCCAAGATCAAAGGTTCTTTTAAAGTTATTGACACCCTACTTAGTTCACAAATGAGAGTCGCACCATGCATAAGCGGAAAGCACTCCGAATTCCCAAGCATCCCTTCAGCTGATCTGAAATCAGTCGCTATGGAGCTTCTGATTGCATTTGTGTAGCGGTTTGAAACATCAAACTGCGCCCCGGGCACCTGCTGTTCTCTGTTGTTGTTAATGCGCTGTCCTCAATCCCAGCATGCTTAGGAAGCAGCATCTACTATTGCAACATAAAAGTAGCATTTCTTTTGACATTGTTCATTATTAACTGCACTTGGTGGACTGCGCAGCACAAAACACGTCCTTTCATTGTGTGCATCTTTCATGTTTTATCACTAAGACGCCCTTAACGTCGGTCTGCGTGCTGTAATTACTTCTTGCGGGTTATCAGCACAAGCGGGTCAGGTCTCCAGTGGACGCGCAAACACAAGTCTGGACGAGTGGCGGTGGAAATCTGGGGCGAGCTGGAGCTTGATGTTGTGATTGGCATCGCCTGGTTTAAAAGAAGGACTCTGGGTGctatatatagattaattattGTTGCACAAAGACGTCCTTCTGGAGTGTTTGCAGATAAGATGTTTACAGACTAGACTAAAGAGAAAAGGGAGGAGGCCGACAGGACTGAGCGCCACTCAGAGTTAAACTGAGAACGCCTTTGAAACCGTACCATAGGGAGgggtcaacacaacgaaatgaactgctaactattgcagcatgcagtggatgcccttccagccagaaTCATGCAtgtactagaaaacacccataaacactaacattcacacacagactcatatGGCCTATATTGTTCACCCAACTCACCTAAAGCgcgtgtctttagactgtgggggaaaccggagcacttggaggaaacccacgccagcacagggagaacatgcaaactccactgagaaaccagctcaaaccagcgaccttcttgctgtgaggcgacagtgttaacccaCTTTCAAAATGTTTGAAACTTTTGATGATATTGACTTTGATTGTTTGACTTCTGCTAACATATattaaatgctaatttttttGTCACATGTTCATTTTTAATGCATAAATCATTTACATATAATAGAAATGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008853 True 1999 lncRNA 0.43 2 38084872 38087013

Neighbor

gene id symbol gene type direction distance location
XLOC_004291 klhdc8a coding downstream 1399 38033115 ~ 38083473 (-)
XLOC_004292 AL928854.1 coding downstream 43450 38039964 ~ 38041422 (-)
XLOC_004289 slc41a1 coding downstream 87453 37948839 ~ 37997419 (-)
XLOC_004290 NA coding downstream 97314 37984951 ~ 37987558 (-)
XLOC_004288 etnk2 coding downstream 204380 37848705 ~ 37880492 (-)
XLOC_004294 NA coding upstream 62876 38149889 ~ 38198887 (-)
XLOC_004295 NA coding upstream 252426 38339439 ~ 38425803 (-)
XLOC_004296 elk4 coding upstream 383532 38470545 ~ 38492564 (-)
XLOC_004297 si:ch211-117k10.3 coding upstream 418144 38505157 ~ 38513978 (-)
XLOC_004298 slc45a3 coding upstream 430242 38517255 ~ 38533505 (-)
XLOC_004063 CR854846.1 misc downstream 21957194 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 25393181 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 25463105 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 25493576 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 25571610 12512966 ~ 12513262 (-)
XLOC_004287 NA non-coding downstream 257399 37780578 ~ 37827473 (-)
XLOC_004284 NA non-coding downstream 470334 37613547 ~ 37614538 (-)
XLOC_004283 NA non-coding downstream 480891 37593008 ~ 37603981 (-)
XLOC_004305 AL845324.2 non-coding upstream 860974 38947987 ~ 38949751 (-)
XLOC_004308 CU210919.2 non-coding upstream 1002862 39089875 ~ 39089991 (-)
XLOC_004311 NA non-coding upstream 1121171 39208184 ~ 39212765 (-)

Expression


Co-expression Network