XLOC_004295


Basic Information

Item Value
gene id XLOC_004295
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38339439 ~ 38425803 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008860
CGAATCGATTCGGTTAAAGATTCAAACACCCAAAACTGATTCGTGCAACAGGTGTGTTTCTCTACGAGTTGGTCCTCCCACATAATTCGCTCGCTATCAAAACTAACAAAATCGAGGTGAAGAAATCACGCATTGCTGCCTGAGGCGACATCATGTTTGGAGGCTTTACTGTATGTTTCATTTCCAGCGTAAAGATCTGACAGgCTCCAGAAGCTGATGGTGCTGCATGCAGTGAGTCTGTGCTGTTGCTGCGGTACCTGGGCACATGATTAATGAGCGCTTGAGCTCGGTACTGAGGAAACAGGCACTTCCGACGGTGGTGGTTCTTCTTTTTCCTCTCATCCTGACCTGCAGACGTCTCTCCCGCCACGCTTGGCTTGGAGGTTGATTTGCAGCTGGAGGGAAGAGGACGGGTAAATAGAAGAAACGCGCTCTTGCGTCTCCTCTCCGCCTGTCCTCGGATCCGCTTCCTCCTTCCAAACTCCAGCTGCCTCCATCAGTGCTGTCTCTCCCGGGGTGGAGGAAGGAACGGCGTGCCAAgccttcagccaatcagagcagctGGTTGGTGGAAGGGGGAAGATGGGGCGTTGTGGAAACAGCTGCCTCACACAGACAGCTGAGGAGCCTGATTGCTCcccaaacaaatgttttgttccCTGCATGCAGCCAGGTCCAAATCCCAGCTCAGCAGCGGACTGAGGTATCATTGCCCATCGTTTATTCAGTCTTATGCAGCCAGAGTTTTGTCTTTCAAGCAGGTCTGCATTGACCTCAGAGCTTATAATATGCAGTTTTGTGTTATacaaattttgtgatttttatctTAGGAAATATGAGGCTTAATATAAATCGGGATCTGTTACAGCTAGGGTTGCGcagtatattgtttcagcattgacatTGCGATGTGCACATCCACCGGGGTCACATTTCTGGATGTGCAGTGTCATGGCTGACCTGGTACCACAGTTCAGAATGCAAATGATTTGCTGATTAATAGCAAATTTGAGCTGTAATACACTAAAAGTGTATCAGTTCCTCAtgttttaaagcaggggttcccaaactttttagcccacaacccccaaaataacaattccagtgactcaAGACCTCCACTATCCTCAGAGCTGGATATATACATGCAAagattgcacacacaccaatatgaACCTAAACACAATCATATTGACAActcaaaaaaagtgcaacagtctaacaaccatataattttttagtagtcattattcatttgtttaatttattagtaatgtttactggactgtcctgcttttaatgattccagaagactttttatatgaaattaactctcatttttagcaaagtgacaccagaaaagattttagaattcttatcatgtattaacactaaaaattttatttaacttgtgcattcatttgtttgttgttcttaattgtttatttacttttaaaatgttcttgCCGTGAAAATAGCcatggttgctgacatggcaataaataaataataataaaaaatacattacattacaatagtAATCTTACTTAAAATGTTTATAGCACAAGACTATTCAAGCCCTTCCTGAGCAAGGCTGATCTTAAGAAAGCCATCAATGCTTTTGTTAGTTAACATTaggactactgtaatgcactttgTTGGAGTTAACCAGTCATGTCTTCATCGTTTGCAGCTTGTGCAAAATGCTGCTGCTCGCCTGTTGACTAACAGTAGGAAAATTGAGCACATTACACCAATTCGGTACTCCCTCCACTGGCTCCGTTAAGTTTagaattaatttaaaacttttagtgtttgtttttaatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008860 True 1827 lncRNA 0.42 3 38339439 38425803

Neighbor

gene id symbol gene type direction distance location
XLOC_004294 NA coding downstream 140552 38149889 ~ 38198887 (-)
XLOC_004293 NA coding downstream 252426 38084872 ~ 38087013 (-)
XLOC_004291 klhdc8a coding downstream 255966 38033115 ~ 38083473 (-)
XLOC_004292 AL928854.1 coding downstream 298017 38039964 ~ 38041422 (-)
XLOC_004289 slc41a1 coding downstream 342020 37948839 ~ 37997419 (-)
XLOC_004296 elk4 coding upstream 44742 38470545 ~ 38492564 (-)
XLOC_004297 si:ch211-117k10.3 coding upstream 79354 38505157 ~ 38513978 (-)
XLOC_004298 slc45a3 coding upstream 91452 38517255 ~ 38533505 (-)
XLOC_004299 nucks1a coding upstream 114335 38540138 ~ 38554394 (-)
XLOC_004300 pimr127 coding upstream 468016 38893819 ~ 38899816 (-)
XLOC_004063 CR854846.1 misc downstream 22211761 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 25647748 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 25717672 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 25748143 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 25826177 12512966 ~ 12513262 (-)
XLOC_004290 NA non-coding downstream 351881 37984951 ~ 37987558 (-)
XLOC_004287 NA non-coding downstream 511966 37780578 ~ 37827473 (-)
XLOC_004305 AL845324.2 non-coding upstream 522184 38947987 ~ 38949751 (-)
XLOC_004308 CU210919.2 non-coding upstream 664072 39089875 ~ 39089991 (-)
XLOC_004311 NA non-coding upstream 782381 39208184 ~ 39212765 (-)
XLOC_004312 NA non-coding upstream 877794 39303597 ~ 39305163 (-)
XLOC_004313 CR847998.1 non-coding upstream 1211937 39637740 ~ 39645310 (-)

Expression


Co-expression Network