XLOC_004296 (elk4)


Basic Information

Item Value
gene id XLOC_004296
gene name elk4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38470545 ~ 38492564 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008195
TGTTATATAATATTTCAATGCCATCCGGATTTGGATTCTGAATCTCTTCTCACCCAGACGttttaatatgttaattatttttacCATGGTCACATATTTAAATGGGACAGTCCATCATAAGATGATCTGCATGCTTTTACTTCAGTCTGCATTTACTGCATTTCTCAAGCTGCTGAACATACATCTGGAGGACATTAACGCTGTTCAAACTGAATAGACCAGGTTTCTTACAGATTCATAAAATCTCAGCCTTTGTTCTGCAGTTTTATTGCGCGCTGCTACAGTGAAAGTGTTTAATCTGCTGGGCTTGTTGCTTCCTGTATTGCATTGTTATGGTTGCAGCTAAAATATGAGTAACTTAGCAACGATTGAGATACTTTATCGTTTCTCTTTTCCCTTTCTCGTTGTAAATACGACAAGAAATCGCTTTAAATAGTCGAATTTACATCAACTACTGTTAGTTCAATGGGTCTAAAGTTTGCTAAGACTCCGTTAGCTAGCGGACTAGCACGCTATGCTAGCTGACCACCAAATATCTTTACACGatgtaaacatacaaaaaaacggacagcattttttattttattttatttcttttgggGAATCAATCTGTTAAACTCCACACGAGAAACGACTCTGGAGAGCAGAAATCTTTTCAGCCTCCTTCAAGATATTTTTAGGAATATGCCGTGAAATGTCAGCCAGCCTGTGAGCGTGATCAGGATCCTGAAGGTATCGTATCGAGAAGGACATGGACAGCTCTGTGACACTCTGGCAGTTCCTGCTGCAGCTCCTGCTGGACCCAGGGAATGAGCAGCTCATCTGCTGGACCAATGAGGATGGAGAGTTCAAGCTGCTGCAGGCGGAAGAAGTGGCCAGATTATGGGGAGCCCGCAAGAACAAACCCAGCATGAACTACGACAAGCTCAGCCGGGCCCTGCGCTACTACTATGACAAGAACATCATCAAAAAAGTCAACGGCCAGAAGTTTGTCTATCGTTTCGTGTCGTACCCTGACATCCTAAAAGGAGACGTCATGGCCAGGGCCGAGGGTGCAGACGGAGGCTCGAACGGCCCTCTGCCTCTCTCGGACCAACCAACAAACATCTCCAGAGATAAAGACAACAAATCCATCATAGAGCGGGGAGCCGGAACACTGGCTCAGTCTAAATCATCCAGCCGGAATGAATACATCCACTCTGGCCTTTATACATCCTTCACTTTGACCTCTTTGCAATCGGGAACGCAACTTTTTAAAGCCACCAAGAATGAAAACCCAGGAGAAAAGCTAATGGAGAAAAAAAGCACCCAGGATTCACCCCAGCCGTTATCCACAGTTATCAAATTTGGGACCATGCCACAAAAAAGCACCACTGCGTCTGCTATAGGAAGACCTGAACTTCCAGAACAGTCCGCTCAATCACCTCTGGCTGATCCCGAATCCAAACAGACCTCCATCTCCAATACTGTGTGTGCGTTTGTGGAGAAAACGTCTTCAGAGAACGCCATGACAGGCTTCCCTGTGTCCAGCATCTCTCCATCAGTGCTCCATCATTCCTCCCAGTCTCCCTCTTCTTCTCCCATGACAGATTCACAGCAGCTGGTGATTGACAGTGAGATTGAGTCTCTTTCCTCACAGCCTTCAGAGTTACAGCTGCAGGTTCAGCCGTTCTCTGTTTCTAAGGCCACGGTATCATCTTGTGTCCTGCCCGAATCTCCACCCCGCAATATCAGCTCCAAATCGAAGAAACCCAAAGGCCTTGAGTTAATGCCCACGCTGGTGGTTACCAGCTCTGACCTGAGCCCTCTCAATCTGTCCAGCCCGTCCCTCCCGACGGCGTCTCTCACCCCAGCCTTCCTGCAGACGCCGCTGCTGCTCACGCCCAGTCCACTTCTGTCGAACATTCATTTCTGGAGCACGCTGAGTCCTGTGGCGCCGCTCAGTCCCGCAAGGAGACAGGGAGCACACAACCTCTTCCAGTTTCCTTCTGTCCTGAGCTCCACACAGTTCACTGTTCCCATCTATAATTTAGACGGCACCAACACACCAGGCCCTCTCTCCCCCGACCCACAGAAGACATAAGAGGAGCACCGAGGCCTTCACACTTCATCTCTGCCTCATGTTCTTGATTGATAAACGCAGATTAACCTCATTCTGTTCACCTGATCCGGCCCTCTTCAGGTAACCAAGATTTATGACCATCGTTTAAGCATCAAGAGCATCCGCTTGACTCTTGAACTTTGCGATGCCACATACACTTTAACTTCGGATGTATATCAAGCCATCAGAATGTGTCTGCGGGACACTTTAAAACTGTCCTTTTTTGATTTTCTCCACTGCGACTGAAGCAGATGGATATTCAGCTCCATCTCTTGCCAAAACGGGCATCTTGTGCGTGTTTCACCATTGTTTGATCGGGATCCTAATTGAATTTAGTTTCTTGTGGAGCTTAAGACTTCAATTAGACTCTGAAGAGGTTCCCACATGACGTCAACAGCCTGTTTTTGCATCAGATAAAGAGCGATCGCTGTATATAATCCAGCAAGTTCACCTCGTCTCAACTCATGTTTGCCTTTTGTTTGAGAAGTCCTCAAACAAGCCTGCCTTGCCAAGCCAAACCGCCCCTTTGCCTTGTGATTTTGTTAATGGCGACCTCTGTTTTATCTTGTACCTTTCCTCATGCTGCACTTATACTGCCATGTAGTTAACGTGTTTTGTCACAATAACCACACGTACAGCACTTGATGAAAACAAGCTGCACTTATATAAAGGCTTTCGTGCCTACTTGTGTTTACTAGCCATCCAGAAATAGTCAAGGAGAGGGGTCGAAAATTACCTCATGTATATGGAAAAACTAAAAGGAAATCAAGCACGATTTGTTTCAGGGTTGTACACAAACGTTGGTTTATATGTGAACATTATAAAGGAACTCCGCACCAGCATTTTTTGTGAACACTTTGTGCTCCGTGTTGATTGGTTATAAGAGCTTTTGtggttcaatttttttttcttctgcatctAAGGTGCATCATGGTAAAGCTACACAAGTAGCTGGTGCGACGTTTTGACAACATTTTAATCTTAAAGAGCAGCTTGAACACAATTACTATGAAACAATCAGAATCAGCAGAAGTCGAGGTAATTAAAGTTCGTGTGAAATTAAAAGTTACTATATTTATTTTGCCAGCGCACGattttattctttaggtgaataattaattaatgcaagttaatccactgaaaaaaaagctttctGCGTTTGGAGTGGCGGTTCTTCTCTCTGACGAAAGTTTTACACAATAAATTTCAGCCACAA
>TCONS_00008196
TTTAATGAATGCGTGCTGGATGAGTGGAGTAAAAGTTCACATTTGTTGCAGACGCCGCTGCTGCTCACGCCCAGTCCACTTCTGTCGAACATTCATTTCTGGAGCACGCTGAGTCCTGTGGCGCCGCTCAGTCCCGCAAGGAGACAGGGAGCACACAACCTCTTCCAGTTTCCTTCTGTCCTGAGCTCCACACAGTTCACTGTTCCCATCTATAATTTAGACGGCACCAACACACCAGGCC
>TCONS_00008197
AATCTGCTGGGCTTGTTGCTTCCTGTATTGCATTGTTATGGTTGCAGCTAAAATATGAGTAACTTAGCAACGATTGAGATACTTTATCGTTTCTCTTTTCCCTTTCTCGTTGTAAATACGACAAGAAATCGCTTTAAATAGTCGAATTTACATCAACTACTGTTAGTTCAATGGGTCTAAAGTTTGCTAAGACTCCGTTAGCTAGCGGACTAGCACGCTATGCTAGCTGACCACCAAATATCTTTACACGatgtaaacatacaaaaaaacggacagcattttttattttattttatttcttttgggGAATCAATCTGTTAAACTCCACACGAGAAACGACTCTGGAGAGCAGAAATCTTTTCAGCCTCCTTCAAGATATTTTTAGGAATATGCCGTGAAATGTCAGCCAGCCTGTGAGCGTGATCAGGATCCTGAAGGTATCGTATCGAGAAGGACATGGACAGCTCTGTGACACTCTGGCAGTTCCTGCTGCAGCTCCTGCTGGACCCAGGGAATGAGCAGCTCATCTGCTGGACCAATGAGGATGGAGAGTTCAAGCTGCTGCAGGCGGAAGAAGTGGCCAGATTATGGGGAGCCCGCAAGAACAAACCCAGCATGAACTACGACAAGCTCAGCCGGGCCCTGCGCTACTACTATGACAAGAACATCATCAAAAAAGTCAACGGCCAGAAGTTTGTCTATCGTTTCGTGTCGTACCCTGACATCCTAAAAGGAGACGTCATGGCCAGGGCCGAGGGTGCAGACGGAGGCTCGAACGGCCCTCTGCCTCTCTCGGACCAACCAACAAACATCTCCAGAGATAAAGACAACAAATCCATCATAGAGCGGGGAGCCGGAACACTGGCTCAGTCTAAATCATCCAGCCGGAATGAATACATCCACTCTGGCCTTTATACATCCTTCACTTTGACCTCTTTGCAATCGGGAACGCAACTTTTTAAAGCCACCAAGAATGAAAACCCAGGAGAAAAGCTAATGGAGAAAAAAAGCACCCAGGATTCACCCCAGCCGTTATCCACAGTTATCAAATTTGGGACCATGCCACAAAAAAGCACCACTGCGTCTGCTATAGGAAGACCTGAACTTCCAGAACAGTCCGCTCAATCACCTCTGGCTGATCCCGAATCCAAACAGACCTCCATCTCCAATACTGTGTGTGCGTTTGTGGAGAAAACGTCTTCAGAGAACGCCATGACAGGCTTCCCTGTGTCCAGCATCTCTCCATCAGTGCTCCATCATTCCTCCCAGTCTCCCTCTTCTTCTCCCATGACAGATTCACAGCAGCTGGTGATTGACAGTGAGATTGAGTCTCTTTCCTCACAGCCTTCAGAGTTACAGCTGCAGGTACGACActttctgatgatgatgatgaccatGTTATACTGTGAGTTGTGCAGTATTGGCTTTGGGAATTTGtgcaataaaacataaataatattgtATGTACTCTGGTGTGTGTAATACAAAAGGATGTAGTTTTAAAGGCTTTTTAGCCCACA

Function

symbol description
elk4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human ELK4 (ETS transcription factor ELK4).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko05202 Transcriptional misregulation in cancer
ko05166 Human T-cell leukemia virus 1 infection
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030716-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human ELK4 (ETS transcription factor ELK4).

Ensembl:

ensembl_id ENSDARG00000077092

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008195 False 3317 mRNA 0.45 6 38470545 38492564
TCONS_00008196 False 241 lncRNA 0.53 2 38471808 38474353
TCONS_00008197 True 1520 mRNA 0.46 3 38480051 38492269

Neighbor

gene id symbol gene type direction distance location
XLOC_004295 NA coding downstream 44742 38339439 ~ 38425803 (-)
XLOC_004294 NA coding downstream 271658 38149889 ~ 38198887 (-)
XLOC_004293 NA coding downstream 383532 38084872 ~ 38087013 (-)
XLOC_004291 klhdc8a coding downstream 387072 38033115 ~ 38083473 (-)
XLOC_004292 AL928854.1 coding downstream 429123 38039964 ~ 38041422 (-)
XLOC_004297 si:ch211-117k10.3 coding upstream 12593 38505157 ~ 38513978 (-)
XLOC_004298 slc45a3 coding upstream 24691 38517255 ~ 38533505 (-)
XLOC_004299 nucks1a coding upstream 47574 38540138 ~ 38554394 (-)
XLOC_004300 pimr127 coding upstream 401255 38893819 ~ 38899816 (-)
XLOC_004301 pimr126 coding upstream 415842 38908406 ~ 38910527 (-)
XLOC_004063 CR854846.1 misc downstream 22342867 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 25778854 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 25848778 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 25879249 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 25957283 12512966 ~ 12513262 (-)
XLOC_004290 NA non-coding downstream 482987 37984951 ~ 37987558 (-)
XLOC_004305 AL845324.2 non-coding upstream 455423 38947987 ~ 38949751 (-)
XLOC_004308 CU210919.2 non-coding upstream 597311 39089875 ~ 39089991 (-)
XLOC_004311 NA non-coding upstream 715620 39208184 ~ 39212765 (-)
XLOC_004312 NA non-coding upstream 811033 39303597 ~ 39305163 (-)
XLOC_004313 CR847998.1 non-coding upstream 1145176 39637740 ~ 39645310 (-)

Expression


Co-expression Network