XLOC_000430 (arhgap10)


Basic Information

Item Value
gene id XLOC_000430
gene name arhgap10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 36771954 ~ 36913091 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000741
GCCCCGGAGTCCTGCACGCGGGAGGAGACTCGCGCTCGACTGTCATTCGCGGACCAAAAACCACACTGGATATTATTACCTCTATTTCAAGCGATATCGGTGTAGCCCAGAGCTGTTTTATCTTATCATACACGAGTTTAAACCCGGGATTTACTTAATCCAGCCAGGACTAAGTTTACTCGTGCGCCTTTGGAAAGAGTTCCATTCCCAAGAGGAGTCCCGACGCGTTTAGTCTTCCTAAAATACACGAGCACGCGTTAGAAACGACTTTTTAACAACAGCCTTTTTATTCAGCTTCTTGATTTGaccattttttgtatttattcattcgcTGGTCGCTTTGTAACGGGATTTAAACGCTAGCTAGTCTTTAAACTAGCTGAGTCCAGTAAAAATGGGTTTACACCCGTTGGAGTTCAGTGAATGTTACCTGGACAGTCCTGCTTTCAGGGACAAAATCAAAGCTCATGAAGCAGAGCTGGAAAAAACAGGCAGATTCATCAAAGAGTTGTACAAAGATGGAAAGAATCTCATCAATGCCACCAAACAACTTTCATTGGCCCAGAAGAAGTTTGCTCAGTGCCTGGGTGAGTTCAAATTCGAGTACATCGGCGATGCCAAAACTGACGACGAGAAGTGCATTGATGAATCCTTGCAAGAGTTCTCCCTCTTTCTCCGTAACTTGGAAGAACAAAGAGACCTGATGATGAGAAACATCACAGAGACACTGATGAAGCCCTTAGAAAACTTTCGAAAAGAGCATCTTGGCTCAGCAAAGGTAAA
>TCONS_00000742
ATGGGTTTACACCCGTTGGAGTTCAGTGAATGTTACCTGGACAGTCCTGCTTTCAGGGACAAAATCAAAGCTCATGAAGCAGAGCTGGAAAAAACAGGCAGATTCATCAAAGAGTTGTACAAAGATGGAAAGAATCTCATCAATGCCACCAAACAACTTTCATTGGCCCAGAAGAAGTTTGCTCAGTGCCTGGGTGAGTTCAAATTCGAGTACATCGGCGATGCCAAAACTGACGACGAGAAGTGCATTGATGAATCCTTGCAAGAGTTCTCCCTCTTTCTCCGTAACTTGGAAGAACAAAGAGACCTGATGATGAGAAACATCACAGAGACACTGATGAAGCCCTTAGAAAACTTTCGAAAAGAGCATCTTGGCTCAGCAAAGGCAGAGAGAAAGAAGTATGAGAAGGAAACAGAGAAGTACTACAGCTCCCTTGAGAAACTTTTGAACATGTCAGCGAAGAAGAAGGAGCCACAATTACAGGAGGCTGATGTGTCGGTGGAACTGATGCGACAGCACTTTCAGGAGACCTCTCTAGAGTATGTTTGCAAACTGCAGGAGATACAGGAGAGGAAGAAGTTTGAGTGTGTTGAACCTATGCTGGCATTCTTTCAGACTGTATTTACCTTCTATCATCAGGGATACGAGTTGGCCAAAGACTTTGACCATTACAAAAAGGCACTCCAAATCAATAttcaaaatACACGGAATCGTTTTGAGGGCACGCGCTCCGAGGTGTTCGAGTTAATGAAGAGAATCAAAGAGTCGCCACAGGATTATAGACAGACGAGCCCTATCAGCAGCGAGGGCTATCTTTATGTCCAGGAGAAACGACCTCCACCTTTCGGATCCAGCTGGGTGAAACGCTATTCCACATTTGTCAAAGAACAGAAGATTCTACATATGAAGACGTTTGACCAGAGATCAGGAGGGAAGCTTGGTGAGACCGAGTCTGTTACACTTAAATCTTGTGTTCGCAAAACCACAGATGCTCTCGACAGACGGTTCTGCCTAGACATTGAGATCACAGATCGACCGGGCACAGTGCTGACAGTCCAGGCACTCTCAGAAGATGACCACAAATTCTGGATGCATGCGATGGGAGGAAAAGAACCAATGCAGTGTCTCAACCGGACACATTCAAGAGAAAGAGGAATTGACGCACAGTTGGATGACGTGGGAATAAGCTTTGTGAAAAACTCAATAAATGCCATTGAAGCCAGAGGTATTAATGATCAAGGTCTGTACAGAGTGGTCGGAGTCAGTTCAAAAGTACAGAAGCTTCTCAGTTTAATGATTGaTGAGAAGAGCAGTGACATCGATTTATCAGCCAATGAGGACTGGGATGTCAAAACTATCACCAGTGCTTTAAAACTTTACCTGAGGAGCCTTCCAGAGCCTCTAATGACATACGAGCTGTATAAGGAGTTCATCGTCCCTGCAAAGAGCGCTAGTCCAGAATCCAGAGTTCAGGCCATACACTGTCTGGTTCATAAACTGCCAGAGAAGAACAGATTAGTGCTCAGTCTGGTTACCAAGCATCTCGCCAAtgtTGCTGCCAACAGCAAACAGAACCTGATGACGGTGGCGAATCTAGGTGTAGTGTTTGGCCCCACACTCATGAGGCCACAGGAAGAAACCGTTGCAGCCATAATGGACCTCAAGTTCCAGAACATTGTGGTGGAAATTCTCATAGAACAGCATGAAAAGATATTCGGGGATGCTCCGAGCAGCTCTCCATCCTTAGCAACTACTCCCCTCTCTGCACCAACCAGACAGTCCAAGAGGCTAAGCCGACAGACTCGCCCGCTGGCTGTGTACAACCCACAGGTGCTGGATATACAAACAGTGTCTCCATCCTCTGAGAGTGCAGGCCTGTGTAATGATGAGACATCAGTGGGCAGTAATGAGTCAGTCTCCTCCCAGTCCTCCAATGCCTCTGGAACGCCTCCTGAGAAATCCAAGAATCACCACACTACCATTAGCACATCCCTGCAAGAAGGCACTGGGATATGCACTGCAACAGCGTCATGGATGAATTCTGCCTCCCCTGCTTCTCTTACACCGGTGAAACATGGATCAGTCAGAACAGAGAAGAATAAACCCGAGGAAAGTGTCACCCTCATGAAAGCAAAGGCTGTGTACCCCTGTGAGGCTGAACACGATTCCGAACTCTCTTTCCAGGTTGGCGCAATCTTCCATGACGTGACACTCTCCAGGGAGCCAGGATGGCTTGAGGGTGTGCTGGAGGGAAAGCGAGGACTCATCCCTGAAAACTATGTGGAGATACTGTAACTCCGAAAAGAaagcaaaggaaaaaaaaatcctcacACTTCTCTTTATATACATGGTATCCATGGTCTCGGCGGCTCTTTCACAACAGCACTGCTTGTCGCTCCTCCATCTTTGTCCACATCGAAGGGGTTTTTATGCTGTATCCAAACAACGCAGATATGTTGCTAGCACAGAAAATGAGTTCAAGTATAAGCTAAGCTGTGCAGTGTGTGTATTAAAGAGGCTACGTTTTTTAGAGATTGGAAATGTAAATATGGTTTTGCATGAGGAAGTATTCATCCTTCGTTGTGACCGTCCGCTTTTAAAGTTGCATGTCTGATGATTTTAGTTTGTAGTTTGGAGTTGTTCAGCGTTCAGTTAAGATACATTGActgtctttttatttaatattatcaaGTCGCGTTCAATTAGGCATGTATTGCAGTAAATTTAAGTGTAACGTTATGACAGTGCAGTGACCATTATCGCTTTGGTAAAATAAGTAAACTATTTTGCTTCTTGGAACACTTTTTGAGATATACATAGCAGCTGATATTGATATTGAAATGCGATTTAGTAAATCATTCGCATTTATAAAACTGATGCTGTGCCTTATGTTTAAATAGCGCATGGCATGCAAGACGCTGTTCGAGAACTCAGATATTTTTTGATATTCTGTCTATAGGTTTAATACAAAAGAGGAAGAAAGAAacctggaaaacaaaacaaaccatgcAGTCCCTTCTAATATAATATTGCCAAGTCTTACATttgtgttgtgtacagtacatagAATAATTTGTGTCTCTTCAAAGCCAAGCACTTTCCCTCTTTAAGTGGATAAAAGGTTTAAAGTTACCACACACTCTTTGCAGAGACCTTCACTGATTTCACTGATGTTTAATGAGTCCGTTTTCATTTTTCTGAGAGCCCTGGTTCACGTTTGTGACTGAGCACATCTGCGGTGATTTAAGACAGTGATTAATGACCTCTGCAAAGGTCTTGGCATTGATATCATTTTTTTTGTGATGTTGAATCTCTTGTTGatcaatgttaaataaataaaatgttttattcttattcttatatcTTGCTTTTATTTCCATGCCAAACTAAGTGTTTCTACATGATGACAACCATATTCTGCAGTGCTCTCTGGACCCCCAATGTGCTTGCTGTGAAATGAACTAAAACATTTGTGATACAactgatgataaaaaaaaaacaatgtacaaaaataatataaaaaatgtgtgtgtgtgtgtgtgtgtgcgcgcatgcccagcataattaagtacagctctaacagatctctcttttaaattaatacttGCTAAAGGACGTTATACTGTACAATTTCTATCTATACATTGGATTGTATTAGTACTGTATGTAGTATGTACAGTATGCTTGATTGTATGTAGTTAGTACCAAAACTAGAACTatctaatttaacaaaataagatcacaggtaaaaaaaaatacagtagtaCACTGAATAAATATGTTAGGTAAAATATAATGTGACATCTCAATGAAGAAAAatgattaa
>TCONS_00000743
GTGACACTCTCCAGGGAGCCAGGATGGCTTGAGGGTGTGCTGGAGGGAAAGCGAGGACTCATCCCTGAAAACTATGTGGAGATACTGTAACTCCGAAAAGAaagcaaaggaaaaaaaaatcctcacACTTCTCTTTATATACATGGTATCCATGGTCTCGGCGGCTCTTTCACAACAGCACTGCTTGTCGCTCCTCCATCTTTGTCCACATCGAAGGGGTTTTTATGCTGTATCCAAACAACGCAGATATGTTGCTAGCACAGAAAATGAGTTCAAGTATAAGCTAAGCTGTGCAGTGTGTGTATTAAAGAGGCTACGTTTTTTAGAGATTGGAAATGTAAATATGGTTTTGCATGAGGAAGTATTCATCCTTCGTTGTGACCGTCCGCTTTTAAAGTTGCATGTCTGATGATTTTAGTTTGTAGTTTGGAGTTGTTCAGCGTTCAGTTAAGATACATTGActgtctttttatttaatattatcaaGTCGCGTTCAATTAGGCATGTATTGCAGTAAATTTAAGTGTAACGTTATGACAGTGCAGTGACCATTATCGCTTTGGTAAAATAAGTAAACTATTTTGCTTCTTGGAACACTTTTTGAGATATACATAGCAGCTGATATTGATATTGAAATGCGATTTAGTAAATCATTCGCATTTATAAAACTGATGCTGTGCCTTATGTTTAAATAGCGCATGGCATGCAAGACGCTGTTCGAGAACTCAGATATTTTTTGATATTCTGTCTATAGGTTTAATACAAAAGAGGAAGAAAGAAacctggaaaacaaaacaaaccatgcAGTCCCTTCTAATATAATATTGCCAAGTCTTACATttgtgttgtgtacagtacatagAATAATTTGTGTCTCTTCAAAGCCAAGCACTTTCCCTCTTTAAGTGGATAAAAGGTTTAAAGTTACCACACACTCTTTGCAGAGACCTTCACTGATTTCACTGATGTTTAATGAGTCCGTTTTCATTTTTCTGAGAGCCCTGGTTCACGTTTGTGACTGAGCACATCTGCGGTGATTTAAGACAGTGATTAATGACCTCTGCAAAGGTCTTGGCATTGATATCATTTTTTTTGTGATGTTGAATCTCTTGTTGatcaatgttaaataaataaaatgttttattctta

Function

symbol description
arhgap10 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP10 (Rho GTPase activating protein 10).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko05100 Bacterial invasion of epithelial cells
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060512-221 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP10 (Rho GTPase activating protein 10).

Ensembl:

ensembl_id ENSDARG00000078326

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000741 False 783 mRNA 0.44 4 36771954 36830175
TCONS_00000742 False 3826 mRNA 0.42 23 36772348 36913091
TCONS_00000743 True 1149 mRNA 0.37 1 36911471 36912619

Neighbor

gene id symbol gene type direction distance location
XLOC_000429 tmem184c coding upstream 25385 36722122 ~ 36746569 (+)
XLOC_000428 ednraa coding upstream 69599 36612660 ~ 36702355 (+)
XLOC_000427 pou4f2 coding upstream 331653 36436936 ~ 36440301 (+)
XLOC_000426 lsm6 coding upstream 567954 36194761 ~ 36204000 (+)
XLOC_000425 BX324156.1 coding upstream 617577 36154261 ~ 36154377 (+)
XLOC_000431 NA coding downstream 52909 36966000 ~ 36966282 (+)
XLOC_000432 FO704615.1 coding downstream 210551 37123642 ~ 37123772 (+)
XLOC_000433 dclk2a coding downstream 282374 37195465 ~ 37310490 (+)
XLOC_000434 fam193a coding downstream 399489 37312580 ~ 37362246 (+)
XLOC_000435 sparcl1 coding downstream 478050 37391141 ~ 37419873 (+)
XLOC_000421 NA non-coding upstream 873517 35896392 ~ 35898437 (+)
XLOC_000415 NA non-coding upstream 1678442 35034294 ~ 35093512 (+)
XLOC_000414 NA non-coding upstream 1910897 34857368 ~ 34861057 (+)
XLOC_000408 NA non-coding upstream 2317507 34450659 ~ 34454447 (+)
XLOC_000436 NA non-coding downstream 678167 37591258 ~ 37638367 (+)
XLOC_000439 NA non-coding downstream 920256 37833347 ~ 37834392 (+)
XLOC_000440 CT583668.1 non-coding downstream 1083368 37996459 ~ 37996577 (+)

Expression


Co-expression Network