XLOC_004300 (pimr127)


Basic Information

Item Value
gene id XLOC_004300
gene name pimr127
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38893819 ~ 38899816 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008202
TGTACAGAAATTAATCTATCATGTTATTTACCGTACTCGGAGTTATTGCTCTCTTCCTGAGAGAAAGAACCATCAAATCCACCGTCTCAGGTCAAGAAGAAAGATTCGACCGTCAGGAAGGATTGGTCACGGCACCCCCAGTGACTAACAGTGATGGTCGAGAAATCGGTGACTGGTGTGAAGATTCATCTTTGCATCTGGAGGAACAGATCAATGTTCAGACTGAGGAATCGTCACTGGAGGAACCTGTTGATGATCATAGTGAAGAatcatcactggtagagcctgtcagtgttcacggtgaagaacaatcactggtagagcctgtcagtgttcacggtgaagaatcatcactggtagagcctgtcggtgttcacggtgaagaatcatcactggtagagcctgtcggtgttcacggtgaagaacaatcactggtagagcctgtcgATGGTCACAGTGAGGACTTAGCCAGCTCCTCCAGCAGTGATGATGTTCCTCCAAACATTTTCTACGCTGAGTCCAGCAGTAGTGATGACTTCCCTCAAGAGTTTTACTCAGCCGGAACCAACTGTAGTAGTGAGCTCACAGTCAGCTCCTACAGCAGCTTCTTCTCTGCTGAatccggctgtggtgatgaccccTCTACAGATTTTCTGTCCGCTGAatccggctgtggtgatgaccccTCTACAGATTTTCTGTCCGCTGagtccggctgtggtgatgaccccTCTACAGATTTTCAGTCCGCTGagtccggctgtggtgatgaccccTCTACAGATTTTCAGTCCGCTGAGTCTGGCTGTGGTGATGACCCccctccaaatgtggtctctgcTGAGCCTGGCTGTAGTCATGATGAccctccaaatgtggtctctgcTGAGCCTGGCTGTAGTCATGAAGACCCTCCAAAGGTGGTCTCTGAAAAGCCCGGCTGTAGTCATGATGACCCTCCAAAGGTGGTCTCTGCTGAGCCCGGCTGTAGTCATGATGACCCTCCAAAGGTGGTCTCTGCAAAGCCCGGCTGTAGTCATGATGACCCTCCAAAGGTGGTCTCTGCAAAGCCCGGCTGTAGTCATGATGACCCTCCAAAGGTGGTCTCTGAAAAGCCCGGCTGTAGTCATGATGAccctccaaatgtggtctctgcAAAGCCCGGCTGTAGTCATTACCCCCCAACAAAAGTGGTCCCTGCTAAGCCCGGCTGTAAAGCTGCCGCTCAAGGTGCAACCGGTCAGACGAAGGGCGCTGTTCCACATCAGCCAAAACAGCTGAATTATAGAAACACACACATCATGGAGATCAACTTCAAGATGTATGAAATTGGCGCTAAGCTGGGCAAAGGAGGCTTTGGAACCGTTTACACTGGGACCCGTATAAAAGATCGCCTTCCGGTGGCATTAAAAGTGGCTGACTTCAAGGTTAAGCAATTCATCCAAGTTGATGATTTTCTCCAGCCACTTCCAGCGGAGATCGCTCTGCACTTTCTTGCCTCTAAAGGCCCCAAAGCTAAACCAATTGTTAAGCTTCTGGACTGGAAAGTGGAGGCTAATCGTTACTTACTAGTCCTAGAGCGGCCCGTACCCTGTGAGAACTTATGGGAATTTCTATGTAAATACGACGGTAGAATCCCAGAGAAGATATTATGGAAAATCATGTTCCATACAACAATTGCAGCTGACATCTGCTGCAAACGTGGAGTGCTTCACCGCGATATCAAGGCTGAGAATTTGCTGATTAACCTGCGGACCCATCAAGTCAAACTGACTGACTTTGGGTGTGGTGAACGCCTTACTAGGAGCTGTTACAAAGAGTACTGCGGCACACCACAGTACTGCCCTCCCGAGTTCAATAGCACTGGCTTATACTACGGGGAGCCAGCGACAGTGTGGTCACTCGGGATTCTTCAGTATTTGCTAATGTTCAAAAAATTTCCAGACTACCATGACCTCCAAAACTTGACTTTCACAAATTTAGGGCAATATGGATGGTCAAAAGAATGCTGTGATTTCATTAGCTGTTGTCTGCAGACTGACTACAAACTTCGGTCTAAGCTGCAAACACTCCGTACCCATGACTGGTTTAAGGCGGAGAACAAGCCGCAATGAGGAGAGATGTCCTTTTTTAATAGGTGGATCTAGCCAGTCCATCCATGCCACCATAGTCCTTTAACTAAA

Function

symbol description
pimr127 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-268 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000095098

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008202 True 2183 mRNA 0.49 7 38893819 38899816

Neighbor

gene id symbol gene type direction distance location
XLOC_004299 nucks1a coding downstream 339425 38540138 ~ 38554394 (-)
XLOC_004298 slc45a3 coding downstream 360314 38517255 ~ 38533505 (-)
XLOC_004297 si:ch211-117k10.3 coding downstream 379841 38505157 ~ 38513978 (-)
XLOC_004296 elk4 coding downstream 401255 38470545 ~ 38492564 (-)
XLOC_004295 NA coding downstream 468016 38339439 ~ 38425803 (-)
XLOC_004301 pimr126 coding upstream 8590 38908406 ~ 38910527 (-)
XLOC_004302 si:ch211-122l14.4 coding upstream 12317 38912133 ~ 38914265 (-)
XLOC_004303 si:ch211-122l14.7 coding upstream 22928 38922744 ~ 38924944 (-)
XLOC_004304 si:ch211-122l14.6 coding upstream 26908 38926724 ~ 38928760 (-)
XLOC_004305 AL845324.2 coding upstream 48171 38947987 ~ 38949751 (-)
XLOC_004063 CR854846.1 misc downstream 22766141 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 26202128 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 26272052 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 26302523 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 26380557 12512966 ~ 12513262 (-)
XLOC_004294 NA non-coding downstream 694932 38149889 ~ 38198887 (-)
XLOC_004293 NA non-coding downstream 806806 38084872 ~ 38087013 (-)
XLOC_004292 AL928854.1 non-coding downstream 852397 38039964 ~ 38041422 (-)
XLOC_004290 NA non-coding downstream 906261 37984951 ~ 37987558 (-)
XLOC_004308 CU210919.2 non-coding upstream 190059 39089875 ~ 39089991 (-)
XLOC_004311 NA non-coding upstream 308368 39208184 ~ 39212765 (-)
XLOC_004312 NA non-coding upstream 403781 39303597 ~ 39305163 (-)
XLOC_004313 CR847998.1 non-coding upstream 737924 39637740 ~ 39645310 (-)

Expression


Co-expression Network