XLOC_004311


Basic Information

Item Value
gene id XLOC_004311
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39208184 ~ 39212765 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008489
cactgctgaggaactgcactattcattgtcttcaataaagtcttctctccgtaagaactttggtcagcttacttattttatgtgttagagtaatctaatacattggcgagccccccaagaacggttaagccaaatacagcaaaatctaacaatTTGGCGAAGCCAGCCAGGAGAGACTGAAAAGAGGAAAACTCATCAACTGCAACAAGAAATGAACTGAAGAATCTTGGAGAATCTACAGTTAAAGCTGAAGATAAACGGATTTTGTTTGTGGACGAGTCCTGGATCTACATATTGTATCTGtggacacactttattttaatcaacTGGATCTCATCTCAAAGATCCTAGTTTGGTGTTCCAGAGGATGACCAGAGACACACAACACCAGACACCTAGATGAACACACCTAAACATCCACAGAACACAACCACATCCTGCTACTTCTACAACATTACAACTTCAAATAGAAATGGACTCAGGCATTTGAGGAAATGCAAGCTTCACCATGCCTTGTTATTCTGTCACTTTAAGTTATATAGCCTGTATTGCAGATTTCTGTATACATGATTAACTTGTTTTATGATCAAATATGATCAGAGGAGGGATTGAAagattatgtgcattttagttcagttgcatttacattgattaaactCTGATGTGATATGATGGGGTGACCTGTGCCTCGACCCCCACAAACTGATAGGTGTGAACTAAATGACCCTTTTACAATCTCAATGGGTATTagcaaaacaacagctgaaacatctgaagagggtcctgctgagcttcgtaaacagaatggtttgtttgatgctagtataaagtactgtctcacagacagtactttgagttaagttacttgaagaccgacgggttaacatcactgctgaggaactgcactattcattgtcttcaataaagtcttctctccgtaagaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0035295 tube development biological_process
GO:0006396 RNA processing biological_process
GO:0072148 epithelial cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0060485 mesenchyme development biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007420 brain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008489 True 944 lncRNA 0.39 2 39208184 39212765

Neighbor

gene id symbol gene type direction distance location
XLOC_004310 wnt4 coding downstream 5269 39167846 ~ 39202915 (-)
XLOC_004309 ap5b1 coding downstream 89255 39112341 ~ 39118929 (-)
XLOC_004307 p3h1 coding downstream 102931 39075613 ~ 39105253 (-)
XLOC_004308 CU210919.2 coding downstream 118193 39089875 ~ 39089991 (-)
XLOC_004306 cldn19 coding downstream 163589 39013763 ~ 39044595 (-)
XLOC_004312 NA coding upstream 90832 39303597 ~ 39305163 (-)
XLOC_004313 CR847998.1 coding upstream 424975 39637740 ~ 39645310 (-)
XLOC_004314 uts2b coding upstream 811417 40024182 ~ 40030139 (-)
XLOC_004315 tnfrsf9b coding upstream 875376 40088141 ~ 40101246 (-)
XLOC_004316 fam83e coding upstream 890955 40103720 ~ 40128722 (-)
XLOC_004063 CR854846.1 misc downstream 23080506 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 26516493 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 26586417 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 26616888 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 26694922 12512966 ~ 12513262 (-)
XLOC_004305 AL845324.2 non-coding downstream 258433 38947987 ~ 38949751 (-)
XLOC_004295 NA non-coding downstream 782381 38339439 ~ 38425803 (-)
XLOC_004294 NA non-coding downstream 1009297 38149889 ~ 38198887 (-)
XLOC_004293 NA non-coding downstream 1121171 38084872 ~ 38087013 (-)
XLOC_004319 CT033813.1 non-coding upstream 969916 40182681 ~ 40182796 (-)
XLOC_004323 NA non-coding upstream 1248086 40460851 ~ 40462487 (-)
XLOC_004330 FP236327.1 non-coding upstream 1547953 40760718 ~ 40761318 (-)

Expression


Co-expression Network