XLOC_004312


Basic Information

Item Value
gene id XLOC_004312
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39303597 ~ 39305163 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008861
GCGTTTACCCCTTTagccagttgaaaacatctcagaATGATGAGCGCACCGCCATTCACgtaacaagaactgaccaatctctttcatattttgtatggactATATAAATTTAGGTAGACTTTATGTCTTAAACACGTCAGCGCTTTTTAATTGTCTCCATCAAGGGTGTAGGTTTGCTCTTGACATTGTTGGCGATTGTTGGGGAATTGTCTTGAACACTGAAGCGATTTTTAATTGTCTCCATCAAGGGTGTAGGTTTGCTCTAGACATTGTTGAGAATTGTTGGCGATTGTTGGGGAATTGTCTTAAACACTGCAGCGATTTTTAATTGTCTCCATCAAGGGTGTAGGTTTGCTCTAGACATTGTTGGCGATTGTTGGGGAATTGTCTTGAACACTGCAGCGATTTTTAATTGTCTCCATCAAGGGTGTAGGTTTGCTCTAGACATTGTTGGCGATTGTTGGGGAATTGTCTTGAACACTGCAGCGATTTTTAATTGTCTCCATCAAGGGTGTAGGTTTGCTCTTGACATTGTTGGGGATTGTTGGGGAATTGTCTTAAACACTGCAGCGATTTTGAATTGTCTCCAAGGGTGTAGGTTTGCTCTTGACATTGTTGGCGATTGTTGGGGAATACAACTGAACGctccgcccaagtaaagtctatgtgtgggaagcactggcatgtcatttagaaaaaaaagcatcgtttgcccttgtaatctttaattgaactctgaaaactgtcaGATTACATCTGTTTGaagtattgggcgtggctaaaatatttaaccacgccccttcatCAGTTTTGACAAccaacagaaatggtgaggaggaggagtctgttaggatGTAATAACTCTTCCCAAACCCAAACTCTTTCTGAAGAAAAGCGTCTACTTTACAACATCCAATCacctcacagtagaaaaaaaacaagccacacccactgtttacTCATTTTATATTTTCAATTTCTTTAGGAAAtgcatcacaatacaaaaagAAGCTCATGCGGACTTTAAGATTGAACCGTGCAGGCAATTTTCATGATTGCGTGAAGCGTCGATATTCTATGGATCAAAGCAAGAGAGAGAAGAGTCGCATGTAAGGAATAAGAAAATGAACAAGGATCTGAAAAGCACTCCAgaatcccacacacacacatagagaaacTCACTCGGTAAATAAAGCGACAGTCAATTACAATGGCCTGGCACAAAAGCCTTACCCAGTGGTTCAATTCAACAGGGAGAAATCTATCCCTCTATCCCTGAATAATTTTACACCTCAGTGCATACGAGACACACAATAAGGGAGGGGTTATGGAGCGAATAAGGGGAACGTGGGACTGGAGAATGGAGGAGAGAATGAAATGGAGGGAGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008861 True 1389 lncRNA 0.41 2 39303597 39305163

Neighbor

gene id symbol gene type direction distance location
XLOC_004311 NA coding downstream 90832 39208184 ~ 39212765 (-)
XLOC_004310 wnt4 coding downstream 100682 39167846 ~ 39202915 (-)
XLOC_004309 ap5b1 coding downstream 184668 39112341 ~ 39118929 (-)
XLOC_004307 p3h1 coding downstream 198344 39075613 ~ 39105253 (-)
XLOC_004308 CU210919.2 coding downstream 213606 39089875 ~ 39089991 (-)
XLOC_004313 CR847998.1 coding upstream 332577 39637740 ~ 39645310 (-)
XLOC_004314 uts2b coding upstream 719019 40024182 ~ 40030139 (-)
XLOC_004315 tnfrsf9b coding upstream 782978 40088141 ~ 40101246 (-)
XLOC_004316 fam83e coding upstream 798557 40103720 ~ 40128722 (-)
XLOC_004317 EMP3 coding upstream 829693 40134856 ~ 40172295 (-)
XLOC_004063 CR854846.1 misc downstream 23175919 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 26611906 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 26681830 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 26712301 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 26790335 12512966 ~ 12513262 (-)
XLOC_004305 AL845324.2 non-coding downstream 353846 38947987 ~ 38949751 (-)
XLOC_004295 NA non-coding downstream 877794 38339439 ~ 38425803 (-)
XLOC_004294 NA non-coding downstream 1104710 38149889 ~ 38198887 (-)
XLOC_004319 CT033813.1 non-coding upstream 877518 40182681 ~ 40182796 (-)
XLOC_004323 NA non-coding upstream 1155688 40460851 ~ 40462487 (-)
XLOC_004330 FP236327.1 non-coding upstream 1455555 40760718 ~ 40761318 (-)
XLOC_004331 CABZ01083815.1 non-coding upstream 1553491 40858654 ~ 40860470 (-)

Expression


Co-expression Network