Item | Value |
---|---|
gene id | XLOC_004321 |
gene name | trim62.1 |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007122.7 |
NCBI id | CM002895.2 |
chromosome length | 45484837 |
location | 40331791 ~ 40418975 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
trim62.1 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including positive regulation of I-kappaB kinase/NF-kappaB signaling; positive regulation of NF-kappaB transcription factor activity; and protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM62 (tripartite motif containing 62). |
id | name | namespace |
---|---|---|
GO:0045087 | innate immune response | biological_process |
GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
GO:0016567 | protein ubiquitination | biological_process |
GO:0051092 | positive regulation of NF-kappaB transcription factor activity | biological_process |
GO:0005737 | cytoplasm | cellular_component |
GO:0046872 | metal ion binding | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
GO:0061630 | ubiquitin protein ligase activity | molecular_function |
id | description |
---|---|
ZDB-GENE-070112-502 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including positive regulation of I-kappaB kinase/NF-kappaB signaling; positive regulation of NF-kappaB transcription factor activity; and protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM62 (tripartite motif containing 62). |
ensembl_id | ENSDARG00000060901 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00008224 | True | 1876 | mRNA | 0.52 | 6 | 40331791 | 40418975 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_004320 | trim62.2 | coding | downstream | 74566 | 40227753 ~ 40257225 (-) |
XLOC_004318 | znf362a | coding | downstream | 127170 | 40175161 ~ 40204621 (-) |
XLOC_004319 | CT033813.1 | coding | downstream | 148995 | 40182681 ~ 40182796 (-) |
XLOC_004317 | EMP3 | coding | downstream | 159496 | 40134856 ~ 40172295 (-) |
XLOC_004316 | fam83e | coding | downstream | 203069 | 40103720 ~ 40128722 (-) |
XLOC_004322 | tnfrsf1b | coding | upstream | 12654 | 40431629 ~ 40457325 (-) |
XLOC_004323 | NA | coding | upstream | 41876 | 40460851 ~ 40462487 (-) |
XLOC_004324 | si:dkeyp-61b2.1 | coding | upstream | 48643 | 40467618 ~ 40504170 (-) |
XLOC_004325 | miip | coding | upstream | 86069 | 40505044 ~ 40519886 (-) |
XLOC_004326 | prxl2b | coding | upstream | 203335 | 40622310 ~ 40647237 (-) |
XLOC_004063 | CR854846.1 | misc | downstream | 24204113 | 16127382 ~ 16127678 (-) |
XLOC_004019 | CR450764.8 | misc | downstream | 27640100 | 12691395 ~ 12691691 (-) |
XLOC_004015 | CR450764.4 | misc | downstream | 27710024 | 12621518 ~ 12621767 (-) |
XLOC_004013 | CABZ01022569.1 | misc | downstream | 27740495 | 12590999 ~ 12591296 (-) |
XLOC_004008 | BX000700.19 | misc | downstream | 27818529 | 12512966 ~ 12513262 (-) |
XLOC_004313 | CR847998.1 | non-coding | downstream | 686481 | 39637740 ~ 39645310 (-) |
XLOC_004312 | NA | non-coding | downstream | 1026628 | 39303597 ~ 39305163 (-) |
XLOC_004311 | NA | non-coding | downstream | 1119026 | 39208184 ~ 39212765 (-) |
XLOC_004308 | CU210919.2 | non-coding | downstream | 1241800 | 39089875 ~ 39089991 (-) |
XLOC_004330 | FP236327.1 | non-coding | upstream | 341743 | 40760718 ~ 40761318 (-) |
XLOC_004331 | CABZ01083815.1 | non-coding | upstream | 439679 | 40858654 ~ 40860470 (-) |
XLOC_004332 | CABZ01044765.1 | non-coding | upstream | 474791 | 40893766 ~ 40895245 (-) |
XLOC_004333 | NA | non-coding | upstream | 529914 | 40948889 ~ 40949818 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000306_11255573_11265079 | TRIM62 | coding | CI01000306 | null | 11255351 ~ 11265145 (-) |