XLOC_004321 (trim62.1)



Basic Information


Item Value
gene id XLOC_004321
gene name trim62.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40331791 ~ 40418975 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00008224
GATTGTGAAGAGCTGCGCGTGCGGTCGGTCGGTCGCTTCAGCTTTTGAAGGGTCTGACGTGATGAAAATGTTGAATTAAAACCACGACCCGCTCTCCTAATTATGTGACAGTCGGCTGCTTCCAGTGTACAACGCGCCAGGACCGTTTTGGAAAATTTCATCGGAGTCATTTTCAAGCCTCGCAGAGCACACTAGGAAGCCCAGCTGCTTAAGAGGCTCAGGGTTTGTGCATCCCGCCACCTGCACAGTGCATGACCGACTCCTCCATAGATTCAAATGGCTAGCTATCTGAAGGACGAGCTCTTGTGTTCTATTTGTCTGAGCATTTATCAAGACCCTGTGAGTTTCGGTTGCGAGCACTACTTTTGCCGTAAGTGCATCACTGAACACTGGAGCAGACAGGAGCATCACGGGACACGAGACTGCCCAGAGTGCAGGAGGACCTTCACGGATCCCCTTCTATCGCCGAGCCTCAAGCTCTCCAACATCGTGGAGAGGTACACCGCTTTCCCCCTGGACGCCATCCTCAATGCTCAGAGGAACTCGTATCCGTGCAAAGACCATGAAAAGGTCAAGCTCTTCTGCTTAAGTGACAAGAGCCTGGTGTGCTTCTTCTGTGATGAGCCTGCATTACACGAACAGCATCAAGTCACCACGGTTGACGAGGCCTATGAGGAGATACAGAGGGAGATGAAGGAGCAGCTGGCGACTCTTCAGGACAGTGAGAAGGGTCATACGGAGGCTTTACAACTACTGCAGAGGCAGCTTACTGAAACCAAGTCATCAGCAAAGAGTCTTCGTGCCACGATTGGCGAGGCATTTGAGCGACTTCAGCGTTTTCTCCGGGAGCGGCAGAAGAGCATGCTAGAGGAACTGGAGGCGGATACGGCGCGAACACTCACTGACATTGAACACAAGATCCAGCGCTACAGCCAGCAGCTCCGCGACGTTAAAGAGGGCATCCAGATCCTGCAGGAGCGACTCAGTGAAACTAGCCGTCACGAATTCCTGGAGGGAATCGCCCTGACGTCGGACAGAATAAAGGGAAAAATCCACGAAACCAACCTCACCTATGAAGACTTCCCCACATCCAAGTACATGGGGCCCTTACAGTATACGATCTGGAAGTCTCTTTTCTTGGATATTTCACCAGTGCCTGCTGCATTAACCATGGACCCCAGCACTGCTCACCAGCGGCTCATCTTATCAGACGACTGCACCATCGTGGCGTATGGCAACCTGCACCCGCAGCCCTTGCAGGATTCACCGCGCCGATTCGACGTAGAGGTGTCCGTTCTGGGCGATGAAGGCTTCTCCGGAGGTGTCCACTACTGGGAGGTAATGGTGTCCGAAAAAACCCAGTGGATGATTGGTGTGGCCAACGAAACGGTCAACCGCAAGGGCAGCATTCAAATCCAGCCCGGCCGAGGCTTCTACTGCATCGTGATGCATGACGGTAATCAATACAGCGCATGCACAGAGCCCTGGACGCGCCTCAACGTCAAGAGCAAACTGGAAAAAGTGGGCGTCTACTTAGACTATCCTAAAGGCTTGCTGGTTTTCTACAACGCTGACGACATGTCCTGGCTGTACACGTACAGAGAGAAGTTTCCAGCCAAACTCTTCCCATACTTCAGCCCCGGTCAAAGTCACGCCAACGGCAAAAACGTGCAGCCCTTGCGAATAAACACAGTGCGTTTATAAAAGCCGATTCAGCACAGAGGTTTTAAGGAaggaaactgcaaaaaaaaaaacctagggTGTATGATAAAGTTTCTTTCTTTCGGGCATGGACATGAAGCCATCTGACTGATGGATTGTGACGTGAAGCTCCGCCGGTTGCTAAATAAATTGGAGAGCTTTGCACTTTTCTGAG

Function


symbol description
trim62.1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including positive regulation of I-kappaB kinase/NF-kappaB signaling; positive regulation of NF-kappaB transcription factor activity; and protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM62 (tripartite motif containing 62).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051092 positive regulation of NF-kappaB transcription factor activity biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-502 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including positive regulation of I-kappaB kinase/NF-kappaB signaling; positive regulation of NF-kappaB transcription factor activity; and protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM62 (tripartite motif containing 62).

Ensembl:

ensembl_id ENSDARG00000060901

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00008224 True 1876 mRNA 0.52 6 40331791 40418975

Neighbor


gene id symbol gene type direction distance location
XLOC_004320 trim62.2 coding downstream 74566 40227753 ~ 40257225 (-)
XLOC_004318 znf362a coding downstream 127170 40175161 ~ 40204621 (-)
XLOC_004319 CT033813.1 coding downstream 148995 40182681 ~ 40182796 (-)
XLOC_004317 EMP3 coding downstream 159496 40134856 ~ 40172295 (-)
XLOC_004316 fam83e coding downstream 203069 40103720 ~ 40128722 (-)
XLOC_004322 tnfrsf1b coding upstream 12654 40431629 ~ 40457325 (-)
XLOC_004323 NA coding upstream 41876 40460851 ~ 40462487 (-)
XLOC_004324 si:dkeyp-61b2.1 coding upstream 48643 40467618 ~ 40504170 (-)
XLOC_004325 miip coding upstream 86069 40505044 ~ 40519886 (-)
XLOC_004326 prxl2b coding upstream 203335 40622310 ~ 40647237 (-)
XLOC_004063 CR854846.1 misc downstream 24204113 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 27640100 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 27710024 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 27740495 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 27818529 12512966 ~ 12513262 (-)
XLOC_004313 CR847998.1 non-coding downstream 686481 39637740 ~ 39645310 (-)
XLOC_004312 NA non-coding downstream 1026628 39303597 ~ 39305163 (-)
XLOC_004311 NA non-coding downstream 1119026 39208184 ~ 39212765 (-)
XLOC_004308 CU210919.2 non-coding downstream 1241800 39089875 ~ 39089991 (-)
XLOC_004330 FP236327.1 non-coding upstream 341743 40760718 ~ 40761318 (-)
XLOC_004331 CABZ01083815.1 non-coding upstream 439679 40858654 ~ 40860470 (-)
XLOC_004332 CABZ01044765.1 non-coding upstream 474791 40893766 ~ 40895245 (-)
XLOC_004333 NA non-coding upstream 529914 40948889 ~ 40949818 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_11255573_11265079 TRIM62 coding CI01000306 null 11255351 ~ 11265145 (-)