XLOC_004323


Basic Information

Item Value
gene id XLOC_004323
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40460851 ~ 40462487 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008862
GTGGAAATGGTCATGACTCAAATATGGTCATTGTTATAGTTATTGTTATCATTTCTGGTGTGAACAGACATGGGCTAACCCAACAGCTGGGTTAAAAAAAGAATCTAAattgaatgtaaaaataaattaaaccagtcttaggtttgtccatatttgggttagatttagattaatacaacccagcattatttagagcagtgtttctcaaccacgttcctggaggtccaCCAGCACTTCATGtattggatgtctcctttgtctgttacacccatcacaggtctttcagtctccgctaatgagctgatgatctgaatcaggtgtgcttGATCTGAATCAAGAAGACATGGAAATGTGCAGAGTtggtgctcctccaggaacgtggtttaGAAGCACTGATTTAGAGTGATGGGTTTTGGAAACAGTCATGACACAAATATggttaatgttatatttattgttatcattTCTGGTGTGAACAGACTTATGGGCTAACCCAACAGCTgggttaaaaatgtcatttaaattgaatgtaaaaaaattaacccaTTTTTAGGTTTGCCCTTATTTGGGTTAGGGTTtgggttattttaataaattcccAACTTTCTAGCGTGATGTGGGACACTTTTGGAAAAGGTCATGACACATATGGTCAGTGTTATGTTTATTGTTATCACTTCTGGTGTGAACAGACCTATAGGCTAACCCAACAGCTgggttaaaaatgtcatttaaattgaatGTTAAAAAATTAACCCATTTTTAGGTGTGCCCTTATTTGGGTTTGGGTTATGTTAATACAGCCCACACTTTCTAAAGTGACGTGGAACACTTGTGGAAATGGTCATGACTCAAATATGGTCATTGTTATAGTTATTGTGATCATTTCTGGTGTGAACAGACATGGGCTAACCCAACAGCTGGGTtaaaaaaacaatctaaattgaatgtaaaaataaattaaaccagtcttaggtttgtccatatttggatAAGGTTTAGATTAATACAACCCAGCAttatttagagcagtgtttctcaaccacgttcctggaggtccaCCAGCACTTCATGtattggatgtctcctttgtctgttacacccatcacaggtctttcagtctccgctaatgagctgatgatctgaatcaggtgtgcttGATCTGAATCAAGAAGACATGGAAATGTGCAGAGTtggtgctcctccaggaacgtggtttaGAAGCACTGATTTAGAGTGATGGGTTTTGGAAACAGTCATGACACAAATATGGTTATTGTTAAATTCATTGTTATCATTTCTGGTGTGAACAGACTTATGGGCTAACCTAACAGCTgggttaaaaatgtcatttaaattgaattttaaaaattaaccCATTTTTAGGTGTGCCCTTATTTGGGTTTGGGTTATGTTAATACAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008862 True 1424 lncRNA 0.37 2 40460851 40462487

Neighbor

gene id symbol gene type direction distance location
XLOC_004322 tnfrsf1b coding downstream 3526 40431629 ~ 40457325 (-)
XLOC_004321 trim62.1 coding downstream 41876 40331791 ~ 40418975 (-)
XLOC_004320 trim62.2 coding downstream 203626 40227753 ~ 40257225 (-)
XLOC_004318 znf362a coding downstream 256230 40175161 ~ 40204621 (-)
XLOC_004319 CT033813.1 coding downstream 278055 40182681 ~ 40182796 (-)
XLOC_004324 si:dkeyp-61b2.1 coding upstream 5131 40467618 ~ 40504170 (-)
XLOC_004325 miip coding upstream 42557 40505044 ~ 40519886 (-)
XLOC_004326 prxl2b coding upstream 159823 40622310 ~ 40647237 (-)
XLOC_004327 si:ch211-222l21.1 coding upstream 215129 40677616 ~ 40696136 (-)
XLOC_004328 ccdc114 coding upstream 251236 40713723 ~ 40728380 (-)
XLOC_004063 CR854846.1 misc downstream 24333173 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 27769160 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 27839084 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 27869555 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 27947589 12512966 ~ 12513262 (-)
XLOC_004313 CR847998.1 non-coding downstream 815541 39637740 ~ 39645310 (-)
XLOC_004312 NA non-coding downstream 1155688 39303597 ~ 39305163 (-)
XLOC_004311 NA non-coding downstream 1248086 39208184 ~ 39212765 (-)
XLOC_004308 CU210919.2 non-coding downstream 1370860 39089875 ~ 39089991 (-)
XLOC_004330 FP236327.1 non-coding upstream 298231 40760718 ~ 40761318 (-)
XLOC_004331 CABZ01083815.1 non-coding upstream 396167 40858654 ~ 40860470 (-)
XLOC_004332 CABZ01044765.1 non-coding upstream 431279 40893766 ~ 40895245 (-)
XLOC_004333 NA non-coding upstream 486402 40948889 ~ 40949818 (-)
XLOC_004336 CABZ01087025.3 non-coding upstream 729842 41192329 ~ 41201272 (-)

Expression


Co-expression Network