XLOC_004326 (prxl2b)


Basic Information

Item Value
gene id XLOC_004326
gene name prxl2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40622310 ~ 40647237 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008228
ACACAAGTAGGCGTGTGTATATAACAGCGGCGGTTTTGTTTGTGGTTGTTTAAAGTGTGAAGTACCGTTGAAGGAAACGAGGGCGAATTTCACACCTAaaagctaaaatatatatatataaacactaaaaTGTCGTCCATAAACTTGACCAGCTTAGGAGCCAACCAACTGAAAAACACTACGACGGGAGAGATGGTGGAGATTGGTTCTCTGTGGCGGGAGCAGGCGGTGGTTCTCTTCTTCCTGCGGAGGTTTGGCTGTCAGGTGTGCCGATGGATGGCAGCAGAGGTCAGTAAACTGGAGAAAGACCTGAAAGCACATGGCATCGCTCTGGTTGGTATCGGACCTGAGGAGACCGGAGTGAAGGAGTTCAaggatgggggattcttcaagggTGACATCTACATTGATGAGATGAAACAGTGTTACAAAGATTTAGGCTTTAAAAGATACAATGCCATCAATGTGGTTCCAGCTGCTATGGGGAAGAAAGTACGAGAAATAGCCTCAAAGgCAAGTGCTGAAGGAATTCAAGGGAACTTTAGTGGAGATCTTCTGCAGAGTGGAGGCATGCTCATTGTTGCAAAAGGTGGAGAGAAAGTTCTGCTGCATTTTATCCAGAAATCGCCTGCAGACAATCCACCTCTGGAGGAAATCACTAAAGCTCTCGGGATCTCTGCGAACGTCCAGGCTGGGGAAAAACCACAGTGCAATGAAGATGTTTGCACGAGATAAAGGATTCGTTGTTCTTCATGGACACATTAACTTTGATTGCAGGTTATCCAGTGGTTGGATTGACTTTATTTTGACTTGGATCAATTGTTTTATGTGATGCATAATAAggtctcactttattttaatggtccgtttgttgaatttaagttagattgcatctacatgccaactaattctcattagattatatgtaGACTTTTAGTTTGGggtagtgtaagttgacatgtacttgcaaagtttcttatagtcagttaaatgtctgttaaaggaacAGTATCAACATAtactaagcagacagtctactaacactcaaatggaccatcaaaataaagtgttacccataataATAACATGTCATGCTAAAATACAATGCACTGATCATGCAATTAGGACATTTTGaaaattgaaaacatttttatattcactGCAATCTTGTGttgatttaaaacattaatatgggtttaatcataaataataatagccTCATTAATCAACCAACAGAAAAGTTGCGTTCTGTCAATTGATCTAAAAGGTATAGcatatatgaaaataaatcataataaatatgtttataaatgaaTCTCAGACACATCTGACCAAATGTTAATGAAACATTGTGTAAACGATGACATTTTTGAGcatgtatatattaaaaatcaCTACCAAagcatatttgtgtttttatgcatgaatgtgaacaaataaaaaatggacATGCACAAACAA
>TCONS_00008229
GGTTGTTTAAAGTGTGAAGTACCGTTGAAGGAAACGAGGGCGAATTTCACACCTAaaagctaaaatatatatatataaacactaaaaTGTCGTCCATAAACTTGACCAGCTTAGGAGCCAACCAACTGAAAAACACTACGACGGGAGAGATGGTGGAGATTGGTTCTCTGTGGCGGGAGCAGGCGGTGGTTCTCTTCTTCCTGCGGAGGTTTGGCTGTCAGGTGTGCCGATGGATGGCAGCAGAGGTCAGTAAACTGGAGAAAGACCTGAAAGCACATGGCATCGCTCTGGTTGGTATCGGACCTGAGGAGACCGGAGTGAAGGAGTTCAaggatgggggattcttcaagggTGGTGGAGAGAAAGTTCTGCTGCATTTTATCCAGAAATCGCCTGCAGACAATCCACCTCTGGAGGAAATCACTAAAGCTCTCGGGATCTCTGCGAACGTCCAGGCTGGGGAAAAACCACAGTGCAATGAAGATGTTTGCACGAGATAAAGGATTCGTTGTTCTTCATGGACACATTAACTTTGATTGCAGGTTATCCAGTGGTTGGATTGACTTTATTTTGACTTGGATCAATTGTTTTATGTGATGCATAATAAggtctcactttattttaatggtccgtttgttgaatttaagttagattgcatctacatgccaactaattctcattagattatatgtaGACTTTTAGTTTGGg
>TCONS_00008230
GGTTTTGTTTGTGGTTGTTTAAAGTGTGAAGTACCGTTGAAGGAAACGAGGGCGAATTTCACACCTAaaagctaaaatatatatatataaacactaaaaTGTCGTCCATAAACTTGACCAGCTTAGGAGCCAACCAACTGAAAAACACTACGACGGGAGAGATGGTGGAGATTGGTTCTCTGTGGCGGGAGCAGGCGGTGGTTCTCTTCTTCCTGCGGAGGTTTGGCTGTCAGGTGTGCCGATGGATGGCAGCAGAGGTCAGTAAACTGGAGAAAGACCTGAAAGCACATGGCATCGCTCTGGTTGGTATCGGACCTGAGGAGACCGGAGTGAAGGAGTTCAaggatgggggattcttcaagggTGACATCTACATTGATGAGATGAAACAGTGTTACAAAGATTTAGGCTTTAAAAGATACAATGCCATCAATGTGGTTCCAGCTGCTATGGGGAAGAAAGTACGAGAAATAGCCTCAAAGgCAAGTGCTGAAGGAATTCAAGGGAACTTTAGTGGAGATCTTCTGCAGAGTGGAGGCATGCTCATTGTTGCAAAAGGTGGAGAGAAAGTTCTGCTGCATTTTATCCAGAAATCGCCTGCAGACAATCCACCTCTGGAGGAAATCACTAAAGCTCTCGGGATCTCTGCGAACGTCCAGGCTGGGGAAAAACCACAGGTAACAGAGGGAAGCATTTGTAAGATAAGACAGGAGTAAGGTCAGATGTTGCATGAAGTTTTTAGTAGGTTTACTAGTCAGGAGTTCtacctttttaaatgtttatgtgtcATTTGTGGTAATAAAGCAGcactgcaataaaaaaataatgaccaGTGTAACTGGATATAATTGCATTAACAGAGAAATGGATAGTTtac
>TCONS_00008231
GTTTAAAGTGTGAAGTACCGTTGAAGGAAACGAGGGCGAATTTCACACCTAaaagctaaaatatatatatataaacactaaaaTGTCGTCCATAAACTTGACCAGCTTAGGAGCCAACCAACTGAAAAACACTACGACGGGAGAGATGGTGGAGATTGGTTCTCTGTGGCGGGAGCAGGCGGTGGTTCTCTTCTTCCTGCGGAGGTTTGGCTGTCAGGTGTGCCGATGGATGGCAGCAGAGGTCAGTAAACTGGAGAAAGACCTGAAAGCACATGGCATCGCTCTGGTTGGTATCGGACCTGAGGAGACCGGAGTGAAGGAGTTCAaggatgggggattcttcaaggACATCTACATTGATGAGATGAAACAGTGTTACAAAGATTTAGGCTTTAAAAGATACAATGCCATCAATGTGGTTCCAGCTGCTATGGGGAAGAAAGTACGAGAAATAGCCTCAAAGgCAAGTGCTGAAGGAATTCAAGGGAACTTTAGTGGAGATCTTCTGCAGAGTGGAGGCATGCTCATTGTTGCAAAAGGTGGAGAGAAAGTTCTGCTGCATTTTATCCAGAAATCGCCTGCAGACAATCCACCTCTGGAGGAAATCACTAAAGCTCTCGGGATCTCTGCGAACGTCCAGGCTGGGGAAAAACCACAG

Function

symbol description
prxl2b Predicted to enable antioxidant activity and oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be involved in prostaglandin biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process and prostaglandin metabolic process. Predicted to be located in cytosol. Is expressed in gut and pronephric duct. Orthologous to human PRXL2B (peroxiredoxin like 2B).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0006693 prostaglandin metabolic process biological_process
GO:0001516 prostaglandin biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016209 antioxidant activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00590 Arachidonic acid metabolism

ZFIN:

id description
ZDB-GENE-040426-2556 Predicted to enable antioxidant activity and oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be involved in prostaglandin biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process and prostaglandin metabolic process. Predicted to be located in cytosol. Is expressed in gut and pronephric duct. Orthologous to human PRXL2B (peroxiredoxin like 2B).

Ensembl:

ensembl_id ENSDARG00000029795

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008228 False 1461 mRNA 0.38 7 40622310 40647237
TCONS_00008229 False 708 mRNA 0.44 4 40622828 40647194
TCONS_00008230 False 877 lncRNA 0.44 6 40637354 40647206
TCONS_00008231 True 658 mRNA 0.47 6 40637554 40647190

Neighbor

gene id symbol gene type direction distance location
XLOC_004325 miip coding downstream 102424 40505044 ~ 40519886 (-)
XLOC_004324 si:dkeyp-61b2.1 coding downstream 118140 40467618 ~ 40504170 (-)
XLOC_004323 NA coding downstream 159823 40460851 ~ 40462487 (-)
XLOC_004322 tnfrsf1b coding downstream 164985 40431629 ~ 40457325 (-)
XLOC_004321 trim62.1 coding downstream 203335 40331791 ~ 40418975 (-)
XLOC_004327 si:ch211-222l21.1 coding upstream 30379 40677616 ~ 40696136 (-)
XLOC_004328 ccdc114 coding upstream 66486 40713723 ~ 40728380 (-)
XLOC_004329 tas1r3 coding upstream 84365 40731602 ~ 40742507 (-)
XLOC_004330 FP236327.1 coding upstream 113481 40760718 ~ 40761318 (-)
XLOC_004331 CABZ01083815.1 coding upstream 211417 40858654 ~ 40860470 (-)
XLOC_004063 CR854846.1 misc downstream 24494632 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 27930619 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 28000543 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 28031014 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 28109048 12512966 ~ 12513262 (-)
XLOC_004319 CT033813.1 non-coding downstream 439514 40182681 ~ 40182796 (-)
XLOC_004313 CR847998.1 non-coding downstream 977000 39637740 ~ 39645310 (-)
XLOC_004312 NA non-coding downstream 1317147 39303597 ~ 39305163 (-)
XLOC_004311 NA non-coding downstream 1409545 39208184 ~ 39212765 (-)
XLOC_004332 CABZ01044765.1 non-coding upstream 246529 40893766 ~ 40895245 (-)
XLOC_004333 NA non-coding upstream 301652 40948889 ~ 40949818 (-)
XLOC_004336 CABZ01087025.3 non-coding upstream 545092 41192329 ~ 41201272 (-)

Expression


Co-expression Network