XLOC_004327 (si:ch211-222l21.1)


Basic Information

Item Value
gene id XLOC_004327
gene name si:ch211-222l21.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40677616 ~ 40696136 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008232
AGTTCTCAGGTTCAGGCAGTTTTGATTCACTCTTCCTCCTCACGTCCGTCCGACCGACCGTCTCCTACCTCATCCCACCTCTCTTAACGCTTTCTCGGACATTTTTCTTTAAATCATCTCTATAAACCACCATGGCCGATACCGCTGTTGATACAACCACCACCTCCGAGATCACCGCAAAGGAcctgaaagaaaagaaagaggtGGTTGAAGAGGCAGCGGAGGCTGCGAAGGAAAACGGCAGCGAAGACGCACCTGCCAATGGAAATGGAACAactAACGGTGCTTCACATGAAGAAGAGGAAGCTCATGAGGATGAAGAGGGTGGGGAGGACGAGGAGGCAGGAGAGGCCGAGGAAGAGGAAAACGGTGCTGAGGAAGAGGCAGCGGCAGAGGAACACCCTGTGAAACGTCCTGCAGAAGAGGAGGAGGCAGTGGAGACAAAGAAACAGAAGACAGAGGAGAACGGCGACTCCACAGAGGCTGCTGAAGTCAAAGCTTAAAGTTCATGCTGCCATTCAGTAGCTCTGTCTGTATGGTCAGTATGACCTAGTAGAGTTTGTGCTTTCTGTAAATCTCACAGACATTCCTTTGCCGCTACAACATCTTCTTTTATTGCACTGAGGCCCATAACATCATGACCCTGTCCCCCCTTTTGTAAGACCTTATTTATTGGTGTAGGACCAACATTGGaccatgaatataaaaaaaaagaaacgtttTAGCACACGTTCGTTTAACAAGCACACATTCTACTCTGTTATACGACCAACGGATGTACACGCAAGCAACTGAAAGCCTAAGGTTCTGTCATTTTTTCATGGGTGACATTTTTCTGATCCACTAAAGACCAAAGATGAGTTTTAAGCAGGGGCTAATAGACAATGTTTAACCTGGTTGTGCTGCTAGAAGTTAATCCCTCGCTTTGGCAGATCGGTTAACATAACAGATGGCTCATATAAACGAGGGGCTTTCTTTGGTCAACACTGCCCCCCCTCCCTCTTATAACATGTTAATTAACCCCTTTTTAAATCTTGATGGTCTTTTGTTCCATATGCATTTAAAAAGGATTGTATCTTTCTATCCTTATGTACAGTTTTGGGgttttttgttttatcattgtgTTTTATATGGGAAGTGCAGAATGAAAACAATCTATAACAGAACTGTATGCTGGTACTGGTGTTCTTTCAGTCCTTCAAGCAaaacctgtttttgttttttttattaatgtgttttggttGCTTTTTGACCACTGCTTTGTATAGTTTGGTTCaggattataaataaaaaaacagtcttGTCTTTTTAAAA
>TCONS_00008233
GTCCGTCCGACCGACCGTCTCCTACCTCATCCCACCTCTCTTAACGCTTTCTCGGACATTTTTCTTTAAATCATCTCTATAAACCACCATGGCCGATACCGCTGTTGATACAACCACCACCTCCGAGATCACCGCAAAGGAcctgaaagaaaagaaagaggtGGTTGAAGAGGCAGCGGAGGCTGCGAAGGAAAACGGCAGCGAAGACGCACCTGCCAATGGAAATGGAACAGTAAGCactAACGGTGCTTCACATGAAGAAGAGGAAGCTCATGAGGATGAAGAGGGTGGGGAGGACGAGGAGGCAGGAGAGGCCGAGGAAGAGGAAAACGGTGCTGAGGAAGAGGCAGCGGCAGAGGAACACCCTGTGAAACGTCCTGCAGAAGAGGAGGAGGCAGTGGAGACAAAGAAACAGAAGACAGAGGAGAACGGCGACTCCACAGAGGCTGCTGAAGTCAAAGCTTAAAGTTCATGCTGCCATTCAGTAGCTCTGTCTGTATGGTCAGTATGACCTAGTAGAGTTTGTGCTTTCTGTAAATCTCACAGACATTCCTTTGCCGCTACAACATCTTCTTTTATTGCACTGAGGCCCATAACATCATGACCCTGTCCCCCCTTTTGTAAGACCTTATTTATTGGTGTAGGACCAACATTGGaccatgaatataaaaaaaaagaaacgtttTAGCACACGTTCGTTTAACAAGCACACATTCTACTCTGTTATACGACCAACGGATGTACACGCAAGCAACTGAAAGCCTAAGGTTCTGTCATTTTTTCATGGGTGACATTTTTCTGATCCACTAAAGACCAAAGATGAGTTTTAAGCAGGGGCTAATAGACAATGTTTAACCTGGTTGTGCTGCTAGAAGTTAATCCCTCGCTTTGGCAGATCGGTTAACATAACAGATG
>TCONS_00008234
TCAGTGTGGTTGCCGCTGCGCTCGACGTGCCTTTCAGTTCTCAGGTTCAGGCAGTTTTGATTCACTCTTCCTCCTCACGTCCGTCCGACCGACCGTCTCCTACCTCATCCCACCTCTCTTAACGCTTTCTCGGACATTTTTCTTTAAATCATCTCTATAAACCACCATGGCCGATACCGCTGTTGATACAACCACCACCTCCGAGATCACCGCAAAGGAAAACGGCAGCGAAGACGCACCTGCCAATGGAAATGGAACAactAACGGTGCTTCACATGAAGAAGAGGAAGCTCATGAGGATGAAGAGGGTGGGGAGGACGAGGAGGCAGGAGAGGCCGAGGAAGAGGAAAACGGTGCTGAGGAAGAGGCAGCGGCAGAGGAACACCCTGTGAAACGTCCTGCAGAAGAGGAGGAGGCAGTGGAGACAAAGAAACAGAAGACAGAGGAGAACGGCGACTCCACAGAGGCTGCTGAAGTCAAAGCTTAAAGTTCATGCTGCCATTCAGTAGCTCTGTCTGTATGGTCAGTATGACCTAGTAGAGTTTGTGCTTTCTGTAAATCTCACAGACATTCCTTTGCCGCTACAACATCTTCTTTTATTGCACTGAGGCCCATAACATCATGACCCTGTCCCCCCTTTTGTAAGACCTTATTTATTGGTGTAGGACCAACATTGGaccatgaatataaaaaaaaagaaacgtttTAGCACACGTTCGTTTAACAAGCACACATTCTACTCTGTTATACGACCAACGGATGTACACGCAAGCAACTGAAAGCCTAAGGTTCT
>TCONS_00008235
tttgcattttatttttgatagtaccatttataaaagcaaaacatttattgtcatgatcttttaatttaaaaaaatacctgTTTGATTTCAACAGCAGGAGAGGCCGAGGAAGAGGAAAACGGTGCTGAGGAAGAGGCAGCGGCAGAGGAACACCCTGTGAAACGTCCTGCAGAAGAGGAGGAGGCAGTGGAGACAAAGAAACAGAAGACAGAGGAGAACGGCGACTCCACAGAGGCTGCTGAAGTCAAAGCTTAAAGTTCATGCTGCCATTCAGTAGCTCTGTCTGTATGGTCAGTATGACCTAGTAGAGTTTGTGCTTTCTGTAAATCTCACAGACATTCCTTTGCCGCTACAACATCTTCTTTTATTGCACTGAGGCCCATAACATCATGACCCTGTCCCCCCTTTTGTAAGACCTTATTTATTGGTGTAGGACCAACATTGGaccatgaatataaaaaaaaagaaacgtttT
>TCONS_00008236
ACTACATGAGGTGTTCACATGTAGGAACACGATGGCTTGGTTTCAGATCGCCTTCGTTTTAACTACAACCTGCTAAGACCTGCAGACTTCTGGAAACTGTCTGGCGAGGAGTGGCTTTGGGAATGAGATCATCCTCCTCAATATGGGTGAAGCTGGGTTGGATCTAAGTGTTCATCACAGCCAGTTCAGTGGACACACTTGCTGAAGTACCCAGCATGCCTCATTGAGGACGGGGGGCAAATTGGCCACATTCCACAGCATCATCCCCTATTAGAAAGTCTGTGCTTGGATAGAGGACACAAAAGACTGACCCTGGAGATTTACAGTGTGCACACAGAGGATGAATGCGAGACGCTGAGGGACAAAAGTGCAGGTTAAATGTGACCACGTCGGATTGAcctgaaagaaaagaaagaggtGGTTGAAGAGGCAGCGGAGGCTGCGAAGGAAAACGGCAGCGAAGACGCACCTGCCAATGGAAATGGAACAactAACGGTGCTTCACATGAAGAAGAGGAAGCTCATGAGGATGAAGAGGGTGGGGAGGACGAGGAGGCAGGAGAGGCCGAGGAAGAGGAAAACGGTGCTGAGGAAGAGGCAGCGGCAGAGGAACACCCTGTGAAACGTCCTGCAGAAGAGGAGGAGGCAGTGGAGACAAAGAAACAGAAGACAGAGGAGAACGGCGACTCCACAGAGGCTGCTGAAGTCAAAGCTTAAAGTTCATGCTGCCATTCAGTAGCTCTGTCTGTATGGTCAGTATGACCTAGTAGAGTTTGTGCTTTCTGTAAATCTCACAGACATTCCTTTGCCGCTACAACATCTTCTTTTATTGCACTGAGGCCCATAACATCATGACCCTGTCCCCCCTTTTGTAAGACCTTATTTATTGGTGTAGGACCAACATTGGaccatgaatataaaaaaaaagaaa

Function

symbol description
si:ch211-222l21.1 Is expressed in several structures, including fin; hypochord; intermediate cell mass of mesoderm; mesoderm; and nervous system.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-247 Is expressed in several structures, including fin; hypochord; intermediate cell mass of mesoderm; mesoderm; and nervous system.

Ensembl:

ensembl_id ENSDARG00000076532

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008232 False 1314 mRNA 0.43 5 40677616 40681054
TCONS_00008233 False 915 mRNA 0.47 5 40677978 40681011
TCONS_00008234 False 793 mRNA 0.49 5 40678121 40681089
TCONS_00008235 False 475 lncRNA 0.41 2 40678207 40678766
TCONS_00008236 True 931 processed_transcript 0.49 6 40678213 40696136

Neighbor

gene id symbol gene type direction distance location
XLOC_004326 prxl2b coding downstream 30379 40622310 ~ 40647237 (-)
XLOC_004325 miip coding downstream 157730 40505044 ~ 40519886 (-)
XLOC_004324 si:dkeyp-61b2.1 coding downstream 173446 40467618 ~ 40504170 (-)
XLOC_004323 NA coding downstream 215129 40460851 ~ 40462487 (-)
XLOC_004322 tnfrsf1b coding downstream 220291 40431629 ~ 40457325 (-)
XLOC_004328 ccdc114 coding upstream 17587 40713723 ~ 40728380 (-)
XLOC_004329 tas1r3 coding upstream 35466 40731602 ~ 40742507 (-)
XLOC_004330 FP236327.1 coding upstream 64582 40760718 ~ 40761318 (-)
XLOC_004331 CABZ01083815.1 coding upstream 162518 40858654 ~ 40860470 (-)
XLOC_004332 CABZ01044765.1 coding upstream 197630 40893766 ~ 40895245 (-)
XLOC_004063 CR854846.1 misc downstream 24549938 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 27985925 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 28055849 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 28086320 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 28164354 12512966 ~ 12513262 (-)
XLOC_004319 CT033813.1 non-coding downstream 494820 40182681 ~ 40182796 (-)
XLOC_004313 CR847998.1 non-coding downstream 1032306 39637740 ~ 39645310 (-)
XLOC_004312 NA non-coding downstream 1372453 39303597 ~ 39305163 (-)
XLOC_004311 NA non-coding downstream 1464851 39208184 ~ 39212765 (-)
XLOC_004333 NA non-coding upstream 252753 40948889 ~ 40949818 (-)
XLOC_004336 CABZ01087025.3 non-coding upstream 496193 41192329 ~ 41201272 (-)

Expression


Co-expression Network