XLOC_004334 (zgc:175088)


Basic Information

Item Value
gene id XLOC_004334
gene name zgc:175088
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41078191 ~ 41084363 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008243
CTCAGCTGAGAACAGACCAAGACAAACACCTCTATCTAAGAATAGTCATCTCTCAAATACAAGGAAATGCCTGGAAACCTTATAAAAAATCCTAATGGAGATGAGGGTCTGGAGCACTGGGATCTCACAGAAAATGGAGGTAATCAATGGAGGGTGGAGGACATGCCGGGCGACTGTGGATATGCTCACAATGACGAATTCATCACCAAATACTTCTGCACCTCTTTTCAGCTGTGTAAAAAAAGGCAAGTGATTGACTTGTTGGCGGAGGGTTACGAGCCTGACAATTTAGATATTGCACAGCCAGCTGTTACTGTGGAGGACTGgtacaGTGGCCGAACAGACTGTGGATGCATATATGAGCTCACTGTTTCTTTGCTGGATGAAAGCCATGAGGTCATTACTGAATTTAAGCCAGATGAAGTGACCCTCGACccagacgatggcgactgctcaTGGAGAAATGTGAGCCACACATTCACTGATTACGGTCCGGGTCTTCGCTTCATCTCTTTTGAACATGGTGGGCAGGACACAAAGTACTGGCAAGGCTGGTTTGGTGTGAGAGTAACCGGGAGCTCTGTTACCGTAGACGTCTAAGATGGACCAAACTACAATTCAAATTATACAACATATACAATTCAAGTGAAGACCACTAGAAAAAAATAGGTTGCAACTTGCTTTTAGTTTTGCACATTCTGTACCCAAGTGTCATTAAAAATGTTCCGCTTAATATTAAACATGTAATGCTAACCAATTAAAAGAATCGTCTGATaagattaaaatatattgtacttTACTTTTTTTGAGAGATTTCTTTATGTCTGCTCTGCCACTAACTACCTCTATAGGCTGCTGCAAAGCTATACACCAAACTTCATTAATGCTGCACTTTCAATGAAGTTTATATGCAATCATTTCTTAATTAGCAATCCACTAATGTGATATGAAATACAAATAGGTCTATGTCATTCTAAtgataataaaccaataataaaaGATGAACTGCTTTGGACTCGATCAAATAAAGTCAGAAACTaacactgcatttaaa
>TCONS_00008244
aCAGACTCAGCTGAGAACAGACCAAGACAAACACCTCTATCTAAGAATAGTCATCTCTCAAATACAAGGAAATCACTGGGATCTCACAGAAAATGGAGGTAATCAATGGAGGGTGGAGGACATGCCGGGCGACTGTGGATATGCTCACAATGACGAATTCATCACCAAATACTTCTGCACCTCTTTTCAGCTGTGTAAAAAAAGGCAAGTGATTGACTTGTTGGCGGAGGGTTACGAGCCTGACAATTTAGATATTGCACAGCCAGCTGTTACTGTGGAGGACTGgtacaGTGGCCGAACAGACTGTGGATGCATATATGAGCTCACTGTTTCTTTGCTGGATGAAAGCCATGAGGTCATTACTGAATTTAAGCCAGATGAAGTGACCCTCGACccagacgatggcgactgctcaTGGAGAAATGTGAGCCACACATTCACTGATTACGGTCCGGGTCTTCGCTTCATCTCTTTTGAACATGGTGGGCAGGACACAAAGTACTGGCAAGGCTGGTTTGGTGTGAGAGTAACCGGGAGCTCTGTTACCGTAGACGTCTAAGATGGACCAAACTACAATTCAAATTATACAACATATACAATTCAAGTGAAGACCACTAGAAAAAAATAGGTTGCAACTTGCTTTTAGTTTTGCACATTCTGTACCCAAGTGTCATTAAAAATGTTCCGCTTAATATTAAACATGTAATGCTAACCAATTAAAAGAATCGTCTGATaagattaaaatatattgtacttTACTTTTTTTGAGAGATTTCTTTATGTCTGCTCTGCCACTAACTACCTCTATAGGCTGCTGCAAAGCTATACACCAAACTTCATTAATGCTGCACTTTCAATGAAGTTTATATGCAATCATTTCTTAATTAGCAATCCACTAATGTGATATGAAATACAAATAGGTCTATGTCATTCTAAtgataataaaccaataataaaaGATGAACTGCTTTGGACTCGATCAAATAAAGTCAGAAACTaacactgcatttaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099306

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008243 False 1054 mRNA 0.40 6 41078191 41084358
TCONS_00008244 True 1013 processed_transcript 0.40 6 41078191 41084363

Neighbor

gene id symbol gene type direction distance location
XLOC_004333 NA coding downstream 128373 40948889 ~ 40949818 (-)
XLOC_004332 CABZ01044765.1 coding downstream 182946 40893766 ~ 40895245 (-)
XLOC_004331 CABZ01083815.1 coding downstream 217721 40858654 ~ 40860470 (-)
XLOC_004330 FP236327.1 coding downstream 316873 40760718 ~ 40761318 (-)
XLOC_004329 tas1r3 coding downstream 335684 40731602 ~ 40742507 (-)
XLOC_004335 dnajc11b coding upstream 26034 41110397 ~ 41132296 (-)
XLOC_004336 CABZ01087025.3 coding upstream 107966 41192329 ~ 41201272 (-)
XLOC_004337 mrps16 coding upstream 131828 41216191 ~ 41222971 (-)
XLOC_004338 NA coding upstream 198928 41283291 ~ 41316649 (-)
XLOC_004339 CR759952.1 coding upstream 290648 41375011 ~ 41375126 (-)
XLOC_004063 CR854846.1 misc downstream 24950513 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 28386500 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 28456424 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 28486895 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 28564929 12512966 ~ 12513262 (-)
XLOC_004323 NA non-coding downstream 615704 40460851 ~ 40462487 (-)
XLOC_004340 NA non-coding upstream 615212 41699575 ~ 41710057 (-)
XLOC_004345 NA non-coding upstream 891214 41975577 ~ 41999417 (-)

Expression


Co-expression Network