Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_004337 |
| gene name | mrps16 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 41216191 ~ 41222971 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| mrps16 | Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in alar plate midbrain region; eye; immature eye; midbrain; and optic tectum. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 2. Orthologous to human MRPS16 (mitochondrial ribosomal protein S16). |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005763 | mitochondrial small ribosomal subunit | cellular_component |
| GO:0005840 | ribosome | cellular_component |
| GO:0015935 | small ribosomal subunit | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041010-123 | Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in alar plate midbrain region; eye; immature eye; midbrain; and optic tectum. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 2. Orthologous to human MRPS16 (mitochondrial ribosomal protein S16). |
| ensembl_id | ENSDARG00000098972 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00008248 | False | 1084 | mRNA | 0.38 | 4 | 41216191 | 41222971 |
| TCONS_00008249 | True | 394 | mRNA | 0.48 | 2 | 41216767 | 41220794 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_004336 | CABZ01087025.3 | coding | downstream | 14919 | 41192329 ~ 41201272 (-) |
| XLOC_004335 | dnajc11b | coding | downstream | 83895 | 41110397 ~ 41132296 (-) |
| XLOC_004334 | zgc:175088 | coding | downstream | 131828 | 41078191 ~ 41084363 (-) |
| XLOC_004333 | NA | coding | downstream | 266373 | 40948889 ~ 40949818 (-) |
| XLOC_004332 | CABZ01044765.1 | coding | downstream | 320946 | 40893766 ~ 40895245 (-) |
| XLOC_004338 | NA | coding | upstream | 60320 | 41283291 ~ 41316649 (-) |
| XLOC_004339 | CR759952.1 | coding | upstream | 152040 | 41375011 ~ 41375126 (-) |
| XLOC_004340 | NA | coding | upstream | 476604 | 41699575 ~ 41710057 (-) |
| XLOC_004341 | megf6b | coding | upstream | 489420 | 41712391 ~ 41779281 (-) |
| XLOC_004342 | CR847970.1 | coding | upstream | 559712 | 41782683 ~ 41786522 (-) |
| XLOC_004063 | CR854846.1 | misc | downstream | 25088513 | 16127382 ~ 16127678 (-) |
| XLOC_004019 | CR450764.8 | misc | downstream | 28524500 | 12691395 ~ 12691691 (-) |
| XLOC_004015 | CR450764.4 | misc | downstream | 28594424 | 12621518 ~ 12621767 (-) |
| XLOC_004013 | CABZ01022569.1 | misc | downstream | 28624895 | 12590999 ~ 12591296 (-) |
| XLOC_004008 | BX000700.19 | misc | downstream | 28702929 | 12512966 ~ 12513262 (-) |
| XLOC_004331 | CABZ01083815.1 | non-coding | downstream | 355721 | 40858654 ~ 40860470 (-) |
| XLOC_004330 | FP236327.1 | non-coding | downstream | 454873 | 40760718 ~ 40761318 (-) |
| XLOC_004345 | NA | non-coding | upstream | 752606 | 41975577 ~ 41999417 (-) |
| XLOC_004347 | NA | non-coding | upstream | 781192 | 42004163 ~ 42026598 (-) |
