XLOC_004347


Basic Information

Item Value
gene id XLOC_004347
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42004163 ~ 42026598 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008865
tgtatttgacttttttattgtGTTGTGATGACTTTGCCATCAAGAAATGCAGATAAACAGATGATAACATATCACGACATCCGCATGAAGAGATCTCCAAAACACATGATGTCAACATCAACAGAGTGATTAAACTTTACAAAACATATGATTTAGTACAAATCAGTTTTAACATTCCTCTACATGAGGAGTCGCATTCACAACATCCACAGATGCCACACACTCGATACTGCATTGTAAAACACTCAACCACCTTATATGTGATCAGATAATATACGATAAAAATTCCTATGAGGACAACAGAGTGTTTACCATACTGATCAAATACAACACCTCCCAATATGGGATGTACAGCACTGTGTGTACTTGACATAATTCATCATTAAATCATCATTAAAAAACATCTCCGAAACACATGATGTGCATTAACAAAATGATTAAACTTTACACAACACATGATGTAGTGCACACATTATTAACATTCCTCCACATGAGGAGTCACGTTCACAACATCCACAGACGTCACACACTCAATACTGCATTGAAAAACACTCAGCCACCTTATATGTGATTATAAAATATGATAAGTAGTCCTATGAGGACAACAGAGTGTTTATCATACTGATAAAATACAACACCTCCCAATATGGGACACAGAATTTACTGTACAATctgcagtaacttactgtaaatcagttacaTCAACaatgctgtatttacatttacagcaccatttatcttacTGTATAGGTATTTACAGAATTGTAagtgtatatttactgtaaaatatacagtagttttcacaatgcaactttaaaatacagtaacatactgcatatgTGTTCTACAGTacaatattacagttaaataccgTGTAATTCACACAAACCGTTAAGATGAAAAACATCATTAGCCTTCATTGAAGGTGTTCACACATGTATTTAACAACACATAATAGATTTCCAATGATGGAAACCTGCAAGACTGCATTTATAAAATCAAATGCACTAATATTGTTCATGACATCTATCATAGATGTGTATGATCCAATCAGAGCTGGCTTGCATACATAATGTTTAATATAGACTTTGCTGTCCTCCAGATGGCGCTGCTGGTCCTCTCACATGCATTTCAGCTGTTTGGGGAGAGCTGGGCATCATCTCTGCATCTGTGTCTTCTGCAGTTCCTGGTGAAGATGGTCATTGAGTCTCTTCACAGAAAATCATAATTATTAGAGCAGGTGATTCTCCTGAACTCCTGAAAGTTGTCATCTCCTCATACAGCGAGAGTCTGAGCGTCTGCTGTAGACGTGGAGCTGCTGGAAGCCTCTTCAACTCCAGCTCTTGTTGACTTTGCTGAAGCTCTCGTGCTCAGATGATGAAGTAAGTCTGCAGCTTCTAGTTCAGCTCCAGCAGTCTTCATCTCCGCCTCTTCATCTCCTCTCTGGACAGAAAGAGCTCAATCTCAGCATGTCAAGTGGAGCGTCTCTGCTTTCTTTCTCCAGCTTGGAGGAACTCTGGAGAGCTGATCGTCATCTCtgcatcttcttcttctttctcagCTGCAGATGGAGACAGACGAGCGTCAGGAAAAAGATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008865 True 1598 lncRNA 0.38 2 42004163 42026598

Neighbor

gene id symbol gene type direction distance location
XLOC_004345 NA coding downstream 4746 41975577 ~ 41999417 (-)
XLOC_004346 her15.2 coding downstream 7206 41994287 ~ 41996957 (-)
XLOC_004344 her2 coding downstream 37309 41966117 ~ 41966854 (-)
XLOC_004343 mrto4 coding downstream 150289 41846059 ~ 41853874 (-)
XLOC_004342 CR847970.1 coding downstream 217641 41782683 ~ 41786522 (-)
XLOC_004349 NA coding upstream 15964 42042562 ~ 42044281 (-)
XLOC_004350 abhd6a coding upstream 35469 42062067 ~ 42099645 (-)
XLOC_004351 si:ch211-193l2.10 coding upstream 75063 42101661 ~ 42106310 (-)
XLOC_004352 NA coding upstream 86474 42113072 ~ 42125282 (-)
XLOC_004353 NA coding upstream 95257 42121855 ~ 42124271 (-)
XLOC_004063 CR854846.1 misc downstream 25876485 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 29312472 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 29382396 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 29412867 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 29490901 12512966 ~ 12513262 (-)
XLOC_004340 NA non-coding downstream 294106 41699575 ~ 41710057 (-)
XLOC_004339 CR759952.1 non-coding downstream 629037 41375011 ~ 41375126 (-)
XLOC_004338 NA non-coding downstream 687514 41283291 ~ 41316649 (-)
XLOC_004336 CABZ01087025.3 non-coding downstream 802891 41192329 ~ 41201272 (-)
XLOC_004356 NA non-coding upstream 124846 42151444 ~ 42152573 (-)
XLOC_004363 NA non-coding upstream 715936 42742534 ~ 42745180 (-)

Expression


Co-expression Network