XLOC_004353


Basic Information

Item Value
gene id XLOC_004353
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42121855 ~ 42124271 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008493
CCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTAAGCGGAGGTAAACAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGGCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAGGTTTTCAAGTTTTATGCATCTTCCTACCTGTGCAATTATGAAGATAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATTCGTCAGAAGATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgctttgcttttccagacagcccattactctgaaatgtgtaatgtgtgttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagatgggtgatttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAACTGattcaatgtcatttttttctgttcatctgaataaaatatttttttcaaaatgttacatttttttgacaatttttatttcaaattacatacagtgaattatattttatatgtacagtgaataaaataaaggtctttattctgaattaaaaaattgcacttagaaagtagcttaagaaatgtttatgtatattaatgttctttttttttacttcaaaggcaatgaaagtaaactattatttgccataaaagctcctttctttaaatgtctgcatCCGGTTGGCACTCGAGCCTCGATCAGTTTTCTAGACTGAAATTGTCAGCTAcactcttgtttttttctgtttctgtaaaattCTCACGTTTAATATCAACAACCCACCTCTTCTGTACGACTTTGTCTTTTGGAATCGTGTGGAAACTAAGGTAAGAGTTCAATTTCTGACGCTGTGCGTTGCTGAACACAGCAGTGGTATCTACAAGTACTGTTCTCACgtctttgaaatgacacttttaaacgtttagatgtcatatttatgtagctgacatagacatatataagtgggctataatggcataaaacattaagacaacTGTCCAAAACATTACTCGTTTTTATCAGTAGCGCTCCTGTTGTAGCACTGTACTGTACGATCGCCGGAAGTAGGCTCGGGGTCTTAAATTTTACCGGAAATGCGTCACGCGCCgccgtgcatagagcccatta
>TCONS_00008868
ctatatgcacgcaTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTAAGCGGAGGTAAACAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGGCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAGGTTTTCAAGTTTTATGCATCTTCCTACCTGTGCAATTATGAAGGTAAGTTCAGCTAGCCTGAAGGCTAACTTCAGCGTTAATACTCTTACGATCCGTCCATCTGCAGCTTTATCACgtaagtaaaaataatcatatgtGTACGTAATTCTGTCTCAAAGTGTCAGGTAAAAACCGGGCAGGAATAAGATCTCAGTGAGAGCTTATTACTACCGATAGATCTATGAAGAAATCGGAGTCTCCTCACCAGCTGAGAGTAGGACAGCATACATGTGAAATTCTGTCCCATTCATACTTTTACTGTTCTAAAGTGACCACCACTGTTCAGTTCGGATAATTACAGTAACACAGATGCTGTCTTAGCTTGTaagcatgattattgagcaagatatattaggaataaaataatacaatgccgTTCCATCCACAACAGACAAATAGCACTGTCACTGCTGAGATTTATTGCTGAAACCGTGGAGATGACAGATGCAGTGTAACAGTGTAGATAGCATGCTTTCTATTTAGTCGgtaacattgtaattaaatgggagggtgacccaaaacaataaggtgtcattagttaatttcacatcaacaatttgtctattgcaatatttattagttttttacattaatgaacaaatgcttgttcattgtgcttgttaactcgcaatgtaatagctaatgttaacaagcatgactttggatttttattcattagtaaattagtttaacaatgctaactattaaatattaaatagttattttaatagtgagcaaatacataaactaatgaaaccttattttaaagtgtgactaaagGGAGCTACttttaactaatttaaattaatgatttactgtGTAGTTAAATCTGATGATATTGCTGCAGATGcctttcaaaagaagatattttgaagaaagctgaaaacctgtaaccattgacttccatagtaggaaaaagaactactatgaatatcagtggttgcaagtttccagctttcttcaaagtatttttgtttgtgttaaacatcagaaagaaactcaaacaggtttggaacaagtgaaggatgaggaaatagaattttcagttttgagtgaactgcctttaatgactctctttaaaaacctattaatattcttgtttctgttttctagATAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATTCGTCAGAAGATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgctttgcttttccagacagcccattactct

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043167 ion binding molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008493 False 1288 lncRNA 0.37 2 42121855 42124252
TCONS_00008868 True 1524 lncRNA 0.36 1 42122748 42124271

Neighbor

gene id symbol gene type direction distance location
XLOC_004351 si:ch211-193l2.10 coding downstream 15545 42101661 ~ 42106310 (-)
XLOC_004350 abhd6a coding downstream 22210 42062067 ~ 42099645 (-)
XLOC_004349 NA coding downstream 77574 42042562 ~ 42044281 (-)
XLOC_004347 NA coding downstream 95257 42004163 ~ 42026598 (-)
XLOC_004354 FP325130.1 coding upstream 4281 42128552 ~ 42134968 (-)
XLOC_004355 FLNB coding upstream 26625 42150896 ~ 42230491 (-)
XLOC_004356 NA coding upstream 27173 42151444 ~ 42152573 (-)
XLOC_004357 slmapa coding upstream 180314 42304585 ~ 42418374 (-)
XLOC_004358 arf4b coding upstream 342563 42466834 ~ 42472941 (-)
XLOC_004063 CR854846.1 misc downstream 25994177 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 29430164 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 29500088 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 29530559 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 29608593 12512966 ~ 12513262 (-)
XLOC_004348 NA non-coding downstream 101990 42016754 ~ 42019865 (-)
XLOC_004345 NA non-coding downstream 122438 41975577 ~ 41999417 (-)
XLOC_004340 NA non-coding downstream 411798 41699575 ~ 41710057 (-)
XLOC_004363 NA non-coding upstream 618263 42742534 ~ 42745180 (-)
XLOC_004365 NA non-coding upstream 685243 42809514 ~ 42817704 (-)
XLOC_004368 NA non-coding upstream 937611 43061882 ~ 43062986 (-)
XLOC_004371 NA non-coding upstream 1077264 43201535 ~ 43204207 (-)

Expression


Co-expression Network