XLOC_004360 (atp6ap1la)


Basic Information

Item Value
gene id XLOC_004360
gene name atp6ap1la
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42532464 ~ 42554290 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008271
TCCGGCAGACTCATCTGGATGTATACATGGCATCAACGTGGCGCCCGATGTCTCTCgccttattttcttttgttttcctgCAGATATCCTCGTCTTACGAGCAACTATCCGCATTTGTGGAAGGAAGCTCAGATGATGCACCGTCGAGAGACATCAGCATTCAAGATGgaggatCGGGCAGCTCTAGTTCTCTGTCCGCAGCTGAAGCTCCACTCCGTCGGGCTCTGCAGCCGTACGGATGGCAGCTAGACGTTCCTCCTCGCAGAAAGCTGCTTCAGTCTCCAGGATTGTTGCTTTATTCTCCTCTTAGTGTGACGTACAACGGCAAGACCTGCATCCTCTTCAGGGCCAGGAAGCTGGCCATCAGGTACAGAAACCACAGTCTGGTGGATCTCACAGAGAAAACCTTCAGCCCAGACGCACCGCTCGACACCAAAGGATCCTTCTGCAGTAAAGATAAAGCCATACTCAATCTCCGCTTCGGTGATGTGGAAGATCTTCGAGGACTCTCCATCAGGCTACAGATGTCAAACACGTTTTATGAGTCGGCAGGACAGAACTGGTTCACGCTCGATAACGTGCACATCCATTACAACTGGACGTACGAGGCCACGTTTAATGCCACAGATGTGTACGCGCCATCCACCAACTCATACCACTGCCAGCACGTCAGCAGCCTGCAGAAATACGACACGCTGCTGGTGCCCAGTGCCAACACTGACCACGCAGCAAACTGGCACATCACGTTCACAGACTTCCAGATCCAGGCCTTCAATGTTCAGTCTAGTAAGTTCGCTCCAGCAAGCGACTGCGCCACTTTCTTCACTCCAGCCATCCTGATGGGTCTGATCACGTCTCTGATCCTGCTGCTGGTTCTGGCCTACGCCCTGCACATGGTAGTGCATCTGAAGCACATCGACCGCTATGAAGAGCACAAGACCACGGTTTATTTCCCACGCAGCACAGAAGCCGAGTGCACAGAGAAGAACAACCTCTAGGGGGCGCCGCGCTGGACTCAATGATCCAGACTGACTCCTGTCCGCACCGCCGCCTGGGACTGACTGCACCACGCCAGTGATGTCATTGTGGTGGGACAGTGCAAGTCCGAATCCGGCTCCTTCGGGACATCCGAGGATTTGGAGATTTTTCTCACCAAAAACGAAAATCTAggaatttaaatgttttcagcGTCGGGTTTGGCGAGAGGTTTTCTGGAGGATTGTGGGAATGCAATCGCAACTGAAAGTAATGatgcattggatttactacatttttttaaaaggttaaattgttaatattttttattcgtattcaaatatttcccaaacgatgtttaacagattcaggaatttttcacagtatttcctataatattttttcttctgaagaaagtcttatttgttttatttcggctagaataaaagcagtttttcatttttttaggcCATCAATATTTCTATcccacttaagcaatatttgttttttccaacccgggctcattgtggaaacgtagccccgcggacgtttctgcggaccgcgatttacgtcccgggaggtacgtattcgagcgtttttttgttttcgtggatccgcgagaggccgctgtgcgcgctttttcgcgtctcgggcgccgttctcgcgcgaaaagccgccggatcgg

Function

symbol description
atp6ap1la Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)).

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110318-1 Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)).

Ensembl:

ensembl_id ENSDARG00000091509

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008271 True 1660 mRNA 0.50 7 42532464 42554290

Neighbor

gene id symbol gene type direction distance location
XLOC_004359 pde12 coding downstream 7014 42506052 ~ 42525450 (-)
XLOC_004358 arf4b coding downstream 59523 42466834 ~ 42472941 (-)
XLOC_004357 slmapa coding downstream 114090 42304585 ~ 42418374 (-)
XLOC_004355 FLNB coding downstream 301973 42150896 ~ 42230491 (-)
XLOC_004356 NA coding downstream 379891 42151444 ~ 42152573 (-)
XLOC_004361 si:ch73-106k19.2 coding upstream 165913 42720203 ~ 42730063 (-)
XLOC_004362 CU459094.2 coding upstream 177600 42731890 ~ 42739148 (-)
XLOC_004363 NA coding upstream 188244 42742534 ~ 42745180 (-)
XLOC_004364 si:ch73-106k19.5 coding upstream 192079 42746369 ~ 42761293 (-)
XLOC_004365 NA coding upstream 255224 42809514 ~ 42817704 (-)
XLOC_004063 CR854846.1 misc downstream 26404786 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 29840773 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 29910697 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 29941168 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 30019202 12512966 ~ 12513262 (-)
XLOC_004352 NA non-coding downstream 407182 42113072 ~ 42125282 (-)
XLOC_004353 NA non-coding downstream 408193 42121855 ~ 42124271 (-)
XLOC_004349 NA non-coding downstream 488183 42042562 ~ 42044281 (-)
XLOC_004348 NA non-coding downstream 512599 42016754 ~ 42019865 (-)
XLOC_004368 NA non-coding upstream 507592 43061882 ~ 43062986 (-)
XLOC_004371 NA non-coding upstream 647245 43201535 ~ 43204207 (-)
XLOC_004372 FO834831.1 non-coding upstream 674122 43228412 ~ 43230364 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02130408_02134817 ATP6AP1L, ATP6AP1LA coding CI01000306 null 2129809 ~ 2134817 (-)