XLOC_004361 (si:ch73-106k19.2)


Basic Information

Item Value
gene id XLOC_004361
gene name si:ch73-106k19.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42720203 ~ 42730063 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008272
AATGATCATCCTGACGTCTGAAGAACTCAAACAAGCTGAAAGTGTTTTGAAGAACTTTTTTCCAGAGTCCATTAAGGTTTATGGCTGTATATTCAACATTAACAGAGGAAAACCTCACAATCTGGAGGTTATTGCAGATCTGTGGCCAGAATTCACAGTCATTATTTGCAAACCGAAGGTTCAGGGTGTAAAGAATCGAGAGGGAGATTTTAACATATACAGCATCTACTCAAAGAGCAAAGACAGTTTAAAAAGCTTTCTGGACACACCTGGTGTGATAAATAAAGACGCCTTCACGTTACTGGCAGGTGTTGACATCAGGCATTTAGGAGCGGTTCAGGAGTTTGCGGATCAGCATGGCATTCCCTCCAAAGTCCAAGGAGTGATGAACGTCTTGGTGCTGCAGGATCAACAACAGCTGCAGTTTAAGGACAGACATGCTGGCCTCAGTTTTGCTCCTCTCAGCACGGCTCATGCACATCTGGTGAACAGCACATGGAAGTACGGCGGAGACAGCAGCAGCTACAACTCGGTGctgaactacatttcccataatCCTTCACTGTGTGTGATCGAGGAGGGCCAGACGGAGCCCGTCTCCTGGCTGCTCGTGTATCCTCATGCTGCTCTCGGTTTGCTCTACACATTACCACAACACCGATGTAAAGGCTACGCCAGGCTGCTGGTGTCCATCATGTCCAAGAACCTCCTGGAACAAGGACACCCGGTCTACTGTTTTGTGGAAGAAGAAAACAAGCCTTCCTACAAGCTTTTCACATCTCTAGGGTTCCAGAATTCACCAGATTACAGAGCTGTGTGGTTCGAGCTCAATAAACAACAGGTCAGGGATGAATAATGCAGgaaataaatatattagttacttaaaggggaactattatgcaaaaatcacttataaacacttttaaattGTATGAATATACAATTATATCatttgtattataattatattgtatGAATATATCGgtttctaatagtaaaaatgtataaagtgtatgttttataatcagacttgatgtaaacagtctgcagaaacactttgattgacatcctcCCTTTGttcgtgtcatcagaggggaaaagccccgcccactagagGCCATCTCTCCCTCATAAGCATAAGATGATAGTCTTGttttttaatctgccactatACTGACACATAGGCgtttatagctccgccctcttctggaaagagcacaatctcatttgaatttaaagtgacagccTAAAAGAGTCAGTTTCAGAGAGGTAAGGCTgacttatacttctgcgttgagtgaccCACGGCATGTTCTTTGCTTATAGCcatgcatttacacttctgcgtgctgtttgtgttgctctgcaataacacttctgaaatgttagctggcagtgaggttatgctcctctgtgtcgagtcTATATAAAATACTAAGATTTttagaaatcaccaagcgactCCCCCCCACATCCCACCCCAAATATCTCACGACCACCCAGGGGTCCTGACccctactttgagaaccactgatctagtgggttgtctactgtaATCTTTACGGTGCACGTTCGTGATTTCAGAAGGTGTAGCTTTTGAGTAGCAAGAAAGGGACTGTGTTTGATATTATGCTATTATGCATTTTGGCAGTTTACCTACTGCATTTTTAACAAGACCTTTGGAgattttaacaaatatttgtaatttaacgtAATTAGCATATTTCaagtttaaccagttaaactctgctgctattttgggatttccgcctggattttgcctacccaaatttaaaagcgtcccaaatccacatgcagaggtgtaaatgcaaaaatttggttttatttgaaagaaaaccctttgaattttcataaaacactattgaaagtgtttaaaatatctgtatatgtcgtctgtgttaaaataaacacct

Function

symbol description
si:ch73-106k19.2 Predicted to enable N-acyltransferase activity. Predicted to be located in mitochondrion. Orthologous to several human genes including GLYATL3 (glycine-N-acyltransferase like 3).

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0016410 N-acyltransferase activity molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0047961 glycine N-acyltransferase activity molecular_function
GO:0008080 N-acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-349 Predicted to enable N-acyltransferase activity. Predicted to be located in mitochondrion. Orthologous to several human genes including GLYATL3 (glycine-N-acyltransferase like 3).

Ensembl:

ensembl_id ENSDARG00000102568

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008272 True 1934 mRNA 0.41 5 42720203 42730063

Neighbor

gene id symbol gene type direction distance location
XLOC_004360 atp6ap1la coding downstream 165913 42532464 ~ 42554290 (-)
XLOC_004359 pde12 coding downstream 194753 42506052 ~ 42525450 (-)
XLOC_004358 arf4b coding downstream 247262 42466834 ~ 42472941 (-)
XLOC_004357 slmapa coding downstream 301829 42304585 ~ 42418374 (-)
XLOC_004355 FLNB coding downstream 489712 42150896 ~ 42230491 (-)
XLOC_004362 CU459094.2 coding upstream 1827 42731890 ~ 42739148 (-)
XLOC_004363 NA coding upstream 12471 42742534 ~ 42745180 (-)
XLOC_004364 si:ch73-106k19.5 coding upstream 16306 42746369 ~ 42761293 (-)
XLOC_004365 NA coding upstream 79451 42809514 ~ 42817704 (-)
XLOC_004366 pcdh20 coding upstream 180841 42910904 ~ 42918971 (-)
XLOC_004063 CR854846.1 misc downstream 26592525 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 30028512 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 30098436 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 30128907 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 30206941 12512966 ~ 12513262 (-)
XLOC_004356 NA non-coding downstream 567630 42151444 ~ 42152573 (-)
XLOC_004352 NA non-coding downstream 594921 42113072 ~ 42125282 (-)
XLOC_004353 NA non-coding downstream 595932 42121855 ~ 42124271 (-)
XLOC_004349 NA non-coding downstream 675922 42042562 ~ 42044281 (-)
XLOC_004348 NA non-coding downstream 700338 42016754 ~ 42019865 (-)
XLOC_004368 NA non-coding upstream 331819 43061882 ~ 43062986 (-)
XLOC_004371 NA non-coding upstream 471472 43201535 ~ 43204207 (-)
XLOC_004372 FO834831.1 non-coding upstream 498349 43228412 ~ 43230364 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_01907357_01910697 NA coding CI01000306 null 1907271 ~ 1911561 (+)