XLOC_004362 (CU459094.2)


Basic Information

Item Value
gene id XLOC_004362
gene name CU459094.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42731890 ~ 42739148 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008273
caatATACGGTAAAATATATTCAATATGTttcaatataatatattaaggcaTGGTCTCTCTGTTCATTTTGCACCACTATTGCCTGTTTTTGGTGTCTTGACAACTGAATATGTAGCAGTTTTTAAGTGATGAAGAGCTTGAGCAGCTCCATGTAAGGGCAATGCTTAATTTTACATGGACTGAATGCTGACGCCCTTCTAGATAAAGAAAGGAAGCAGCCCTACAGTCAGACACAACTCCCTCAACACTCCACCAAAACTCTACTGTGATTAAGAACTTGCAATACCCTAAAATGCCTGGCAATCGACAATTAGGCCACCATGGACACAATGaTGAAGACGATGACATACTTTATACCAACGAGCTGTGGGGTGGAAGACATCCTGGAGTTTTCAAAATTTCAAGTGAGCTCAATAAAAATTTACTCAAAAAGGAAACATGGAAATGCAAAAGGCGAGTTACAAAGAAGCCAAAGATGAAACTGGTGTCAGCTGGAGTTGAAATAGGTGAAACCGTGAAAATAATTGACACGATCGACAGAGAACCAAATGCCTACACAGAAGGCACGTACGCTCGACATAAAGGATATAAGGCAGGTCTTAAAAATGAGCCAGGCCAGAGGATTCCCAAGGCTGGGTATTACGCAGAAGCAGGAGTTGGACGAGCTCGAGCTGAATGCAGTGTGTTTGAGGCTGAAGCTAAAGGCCCCAATGCATCAATTGGAGCTGAAATCAGTGTGGTTGGAGCAGGAGCAATGGCTCGAGCTGAAATCGCCAGCGCATCAGCTAATGCCGGTCCACTCGGTGTCAAAGTGGGACTTGGACTCGATACGGGTGCATCTATTGGTGTGGATGGGGTGGAGGCAAAATTCCTGGGAACAGGAGTCTCAATCGGTCCAAAAACCAGTGTGTCTGCTCTGGGTTCAGAAGTGTCATGTTCAGTCATGTAGAAACATAATAAGAACAGGACTCTACCTGTAACAATGCAATAAAGTTCAACCTGAATGAGAACAAAATGACTGAAGTCCACAGAAGTGTGCTACAGTGATTTCTTTAGATCAGtcatgtcaaactcaattcctgtagGGCCGCAAccatgcacagtttagtttcagccctgcttcaacacacttacttgtaggtttcaaacaggactaaagcactcaattagtttgatcaggtgtgtttaattagcgatggatctaaactgtgcagggctggggccctccaggaattgagattGACATCCCTGTTCTAGATAACTGGATCATCCCAAATTCCACTCATTTactattttatgacattttttagTATAAATAGTatcagtagggctgcacaatcaaaaaaaaaaaaaaaaaaaaaaaatcgcaatctcgattcgaccttACACACGATCCCAATTCAGCTTTTCTGTGATTCAGAcatttatattttcaaggtcaggagagaagtgtgaaggcagtcgcacaagtcttcacattgttttatatacggTGCTTAGTAACATGgccacctccaaatggtgttaaaagtgtcacatcctgcatttataaggtataattcaacccaaaatgtaatttctgccttaatgtaatgatgtatttgcggccgcaaaatcacacgagCTGAAGGACTGTTTGCCCAccaatgatgtctactttagttaacagaacctgcataggctgtgattAACAAGTATTAAAGCTTTGAATAACGTTCAGCTTGTAGCACAGAGCAATCGTTAGGAAGCAGTGCGAAGTAGGATgtgcattattgttttttttttctcagtgtgaCAGCAGCCATGACATGTACTACACtctgcagtgaaagtgaaaccaaaagcacttatttaaatgatcatatcgcatttgaGTTataattacgacaagcatttgatatattttttctttcatagcgaacacaaagtgttgtgcatgcaAATACATGTTTACTGAGTCAGTAAACTATAACTACTCTATGTAAAGTTAAATATGATGCAAGGGgcaatctgataatggcaaatgtcttgTTTTACCAGTGAAATAAAATGGTCTGATAATGTTGTCAAtaacaaatgacaagcatatgtctgaaacataataattcacctttatcattattaatagttgtatatacaaaaatgtagcattttaccCAACATTAcagctacacataggcctaatattattattattattattattgtattaccatatgtttgagaaataacaataatagcctactcatattaacctttattttacatctacagaatcaggagaaaatcgtgatcttgattttaagaaaaaacatccttttttttcatttaaccaGAATCCAGGAGTAtcagtagtgcattcacactgaaaaataAGTGTACTTTAAATACCTGGATGATGCCCTCATTCAACGGTTAAAAATAAGTGTGGAATGCTGAATGTTCACAGGTTTGCTCATGTAACAGAAGAGGCAGAGCTATCGGGCAttgatgttggattactttatttcttTTGGATTGTGAGAGCAAAATTCTCTCACACAACTGATTATTCCACCTTCTGATGGGTGTACTTGTAACAGATCCTATTTGGTAGTTTATCGCACTAATTTGGTAACTGTTTAACATTTTCAGGGAAAGTTAGACTAAACAGTACTTTGAGTGCGCAAGTGTATGGAGTATTGTTGTCATTTGGGATGCAACTAAAATTCTATATTACACAATTGAAATTCTAAGGAGTGTAAAGCTGGAAGAAACTACTAATTAAAGTACTGTTTTTATGCTTAAAGATGTGGGtccttttttatgtatttattgctgTTTCATCTGTTGAATCATTAACCTGACTGGATGGACGGGCCACATTAGAAGCACTGCTACTAAAACAAATGCTTAAGAACAAATCTAATGTCTCAGAGGGTGTTTTCAATTGCTGTTGTTTGAGGCATTAATAACATGGCATCAGTTGCATCAAAGTATTGGCATGATCCTATCAAAAGAGATTTATAAAGGGGGATTTATCAATTTTGTgggaaaactgaaaacctgtaaccattgactttaatagtatttgtttttcatattagggaagtcaatggttacaggtttacaacactcttcaaaatattaTCTTAAGCGTTTAACAgcataaagaaactcataaaggtttacaaCCACTAAAGAGAACTACTTCATTTTTTGGTGTAATACCTCTAAGTTTTCATTCATGATAGCTGTTCCAGCATATCTCAGTCCGCCACTGGAGGGCGTCACCTTCACTGCGCTATTCGATTGAAATATCTGGGAGTGTGTTTCCAGAAGTTGTCTCTAAGAGGAGCCTGTACTCTTCAGTGACTTATTTTTGTTCGTTCTTGAATTAAGTATCAGCAGGAATAATATGGATAAAAATGTGCCACACAAAACTGTTTGCTTATCTACTTTTCCTTTAAATCTTGCCATAATGTCTCCAAAATAGCATCTGATACACAGAGAGCTTTAAAGTGAAACTGAATATagtcatttcaaaataaaaatacaaatgtcacAACACTCAAACACAATTAAACCATCCACAAGTTTAAATGCTTAATGAGAccatcttttttatttaacttattttttggCACAAGCTTGAATCTATGTTACTAAAACATCTCTACAGACAAGCTTTTAAGTTAATGAGTTGAAAGCTGCAgtttatgaaaatgtaaaaatatgattaAGTACAGTATAAATAATGATTTACAAAAACATGCCACAAGTGCATAATAAGGcataagcaagcaagcaagcatgTATTATTGACCGCAGGTCCATTCAGACACACTGATGTGACAGCACACGTTTGGGGATATAATCATTTCCTGGCACTGCAATGACAATGAAAGAGCAGGTCATAGTCTGAGGAAACAGACAAACAAGAAAACAGCAGAAATGAATACTTCTTTTTCTGACCAAGTAGAAATTTCAACATTAGTGCAAATATGCTAAATAACAAAAAAGGTttgcaaaaataatataaaaaaaacacattatgtaAACTCATTTACATGCtaaatattatatacttttattttattgtacagaATGCATAAAACACTGTTATGTGTTAAATGCTAGCATTATCAATGTAAACACGATCACACttgcatttatttacatgcaaaatactttttcacagattttttttgtatggAGAAAATGCAACACATTATATGTTACTATTCAACtaaaaatataatgcaataatagaaagaaagaaagaaagaacagaaagaaagaaaaaaattcatttatatgcggaaatattacaattttaacaaA
>TCONS_00008495
CTGTGGGGTGGAAGACATCCTGGAGTTTTCAAAATTTCAACTGGAGTTGAAATAGGTGAAACCGTGAAAATAATTGACACGATCGACAGAGAACCAAATGCCTACACAGAAGGCACGTACGCTCGACATAAAGGATATAAGGCAGGTCTTAAAAATGAGCCAGGCCAGAGGATTCCCAAGGCTGGGTATTACGCAGAAGCAGGAGTTGGACGAGCTCGAGCTGAATGCAGTGTGTTTGAGGCTGAAGCTAAAGGCCCCAATGCATCAATTGGAGCTGAAATCAGTGTGGTTGGAGCAGGAGCAATGGCTCGAGCTGAAATCGCCAGCGCATCAGCTAATGCCGGTCCACTCGGTGTCAAAGTGGGACTTGGACTCGATACGGGTGCATCTATTGGTGTGGATGGGGTGGAGGCAAAATTCCTGGGAACAGGAGTCTCAATCGGTCCAAAAACCAGTGTGTCTGCTCTGGGTTCAGAAGTGTCATGTTCAGTCATGTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000113503

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008273 False 4324 mRNA 0.36 2 42731890 42739148
TCONS_00008495 True 498 lncRNA 0.49 2 42735264 42735848

Neighbor

gene id symbol gene type direction distance location
XLOC_004361 si:ch73-106k19.2 coding downstream 1827 42720203 ~ 42730063 (-)
XLOC_004360 atp6ap1la coding downstream 177600 42532464 ~ 42554290 (-)
XLOC_004359 pde12 coding downstream 206440 42506052 ~ 42525450 (-)
XLOC_004358 arf4b coding downstream 258949 42466834 ~ 42472941 (-)
XLOC_004357 slmapa coding downstream 313516 42304585 ~ 42418374 (-)
XLOC_004363 NA coding upstream 3386 42742534 ~ 42745180 (-)
XLOC_004364 si:ch73-106k19.5 coding upstream 7221 42746369 ~ 42761293 (-)
XLOC_004365 NA coding upstream 70366 42809514 ~ 42817704 (-)
XLOC_004366 pcdh20 coding upstream 171756 42910904 ~ 42918971 (-)
XLOC_004367 EML6 coding upstream 190399 42929547 ~ 43002262 (-)
XLOC_004063 CR854846.1 misc downstream 26604212 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 30040199 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 30110123 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 30140594 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 30218628 12512966 ~ 12513262 (-)
XLOC_004356 NA non-coding downstream 579317 42151444 ~ 42152573 (-)
XLOC_004352 NA non-coding downstream 606608 42113072 ~ 42125282 (-)
XLOC_004353 NA non-coding downstream 607619 42121855 ~ 42124271 (-)
XLOC_004349 NA non-coding downstream 687609 42042562 ~ 42044281 (-)
XLOC_004348 NA non-coding downstream 712025 42016754 ~ 42019865 (-)
XLOC_004368 NA non-coding upstream 322734 43061882 ~ 43062986 (-)
XLOC_004371 NA non-coding upstream 462387 43201535 ~ 43204207 (-)
XLOC_004372 FO834831.1 non-coding upstream 489264 43228412 ~ 43230364 (-)

Expression


Co-expression Network