XLOC_004366 (pcdh20)


Basic Information

Item Value
gene id XLOC_004366
gene name pcdh20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42910904 ~ 42918971 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008278
GTGTCGCTCAGATGAATGAGTGGAGCTCCTCAGTCGCGCATGAAGACGCGAGCGAGAAAGCAGCCGCTCAACGGAGCTCAGAATGCGGATAAAACTGTAAACTCAGCCGCCTCCCGTTCCCTGTGACGCCAACACTGAACGGGAAACATGTGGAACACTAAACGACGAATATGCCTTCACAGCACAGGAGAGTTATGGGGTTTGTTCATTCTCCTCTTGTACAGCATTCCCTTCTCCTGCTCTTCAAATTTCAGTCACCTCATCTATAAGATAAAGGAAGGATTACCAAAAGGAACACTTATAGGGGCTATCAGTGCGGACTTAACCCTGGATCTTTCCGTCAATCCTTCTCGCTCATTCAGCCTGGAGCAAATGACTACCAGCGAGCACTACGTGAATCTGAATAGCACCACCGGGGAGCTGTTCACATCTGCGATAGAGATTGACAGAGAGTCTCTATGTGCTGAATCCCACGAGGGACAGGGCTGTGCAATCTTCCTGGACGTGCTAATCCTTCCCCAGCAGTACTTTCAGCTGGTTAAGATTAAAATCATCATAGAGGACATCAACGACAACAGTCCGCATTTCCCCATGGATGAAATCCGGCTGTCTGTGCCAGAAAACGCACCTGTTAATGCACGGTTTGCGGTGGAGCAGTCCGCAGTGGATCCAGACATCGGGATTCACAGCGTTCAGACCTACTGGCTTAATAATGACTATGGAGTTTTCACGCTGGACGTAGAGGAGAACGAAGGAGGAGAATTGACGCCGTTTCTCATCCTAACCGAGTCTCTTGATAGAGAGGCGCGGGCTGAGTATGTGACTGAAATTATAGCAGAGGATGGAGGGTCTCCGCCTCGTTTTGGCAATGCAACTTTGAGGATTATCATTAGCGACGTTAATGACAACTGCCCCAAGTTTAGAGAGTCTCAAGTGAAAGTGACTCTGTATGGAAATGCCACTAAAGGCATGCAACTGGCTCGTCTACAAGCTTATGATCCAGATGAGGGAGCGAACGCCTTGATTACGTATACGTTCAGTGAACGGGTCAGCCAGGAAAGCAAAAGCTTATTTCACTTGGATACAACGACTGGAGTTCTGAAACTAGCAGGAAAGATCAACAACAACAGTGCGAAGCTATACAAGATAAACATACTAGCCAATGGGGCGGGGTGTATTCCTGACGTTGCTATGGTTAGCGTGCATGTCATCAAACAACTCTCTGGTCCTCCGACGGTTGTACCGCGTTACATTGCGTTTGAGAAAGATGGCGTCGTGAGCTTAAGCGAATCTGAgcctccgttttcccccattgCTTTTTTTACCATCAAAAACACCGAGGCCCAACAGAAGCTGGAGTGTTTTCTGGAAAGTGCAGGTCCTTTTAGGATTGTGCCTTATCAGGGTTTAAAAAACGAGTACTTGCTGGAAACCACTGATGTCCTGGATTATGAGCTGCAACAGGATTATGAAATAGTCATTGTGGTGCGTAATTCCCACGGATTAGCAGTTAACACTGTGGTGAAAGTCCATGTGTTGGATGTCAACGACAACGCTCCGGTTTTCAAGCAGTCCTTCGTTGAAATCGCCGTTGAGGAAAATAACCCACCGAATACGTTCCTGGCTCAGCTTCAGGCGAGCGATGCGGATAGTGAAAGCAGAGGGCAGGTGTATTATCAACTTGGAGCGGACGCTCCCACCATTTTTAACATCGATAGCTACACCGGAGTGCTAACAGTATCAACATCTCTCGACCGAGAGGAAAAGGAGACCTACCGCTTCATGGTTCGAGCTTTAGACAGGGGAACGCCAAAAAAGGAGTCAATCGCGACGGTGATCATCACCGTCCAAGATCGCAATGACAACAGCCCGCGATTCATCAACAAAGACTTCACTTTCTTTGTACCAGAGAACTTTCCAGGATTTGGCGAAATCGGCGTGCTTACAGTCACAGATGCTGACGCCGGAGAAAACGGCTGGGTCGCTCTATCAATCCTCAACGGAAGTGACATCTTTGTTATTGACACCGGACGAGGAGCTCTAAGAGCCAAAACACCATTGGATCGAGAGCAACAGGGGACGTATTACGTATGGATCGAAGCTATTGATGGAGGAGAGCCTGCGCTTTCTTGTGTCACAATGGTGACCGTTCTCCTCCTGGACGTCAATGATAATCCTCCAACAGTTCTCTTTCCGCAATCCAACCAGTCCTTCATGCTGGTGCTTCCTAGCACAGTTCCGGGAACATCTATAACTGAAGTGTACGCTGTGGATCGGGACACGGGAATGAATGCTGTTATTGCTTACAGCATTATTAAGAGAACTGACGGAGAACCAGGGTCGTTTGACATCGATCCGTACACTGGAAACATCACCCTGAGGAAAGCCTTGAACAGTCGGGGGCTTTATAGTTTATGGGTTAAAGTTCGAGATCACGGTCAACCTGAGCTCTACTCCACCGTGCTGGTTAACCTGTTTGTGAATGAAACGGTCAGCAATGAGACGCTCATTCAGAGTTTGTTGCCGAGAGTTGTGGATCTGGATCACGGTGAAGCTCCTCCGGTTAAGGAAGGGAGAGAGGGAGAACGAGTGCCAAATATGTGCAACGAGTATAAAGTCATACTGCTTGCATTGACGGCGACTTGCATGGGACTGTTTTTGACTGTCGTGTCGTTGGTGACGTACATTTGCTGCAAGAAAAGAAAGACGAAAAAGAAGAGGCAAGGCACCGAGACTCTCAAGCTCAACCATGAGATGGTGGAGAAAAACCTACTGGAGATTTCAAACATATGACAGTAAACTGCTCAGCAGGCAAAATCTGCTTGTACTGCCCAAACTattcactgcaaaaatgcttgaCAATGAGTtttcgtcttgtttctagtccaaatatctaaacattcctaAATCAATGTGCATTCTAtagacagctttttaaaaaaatggtcaaTTATATAAGCAAGTTTttgcttaaaacatgctaaataatctGTCGGTGAGGTAAGCAAAGCACATTTATTCCAgatattattttgatattttcccagagatgggttgcagctggaagggcatccgctgcgtaaaaaacttgctggataagttggcggttcattccgctgtggcgaccccagattaataaagggactaagccgacaagaaaatgaatgaattattttgatATAAGGGTGCCACGGGGGCTCTGTGATtagcaataaggttgctggtttgggTCCTagttgggcatttctgtgtggagtttgcatgttctccctgtgttggtgtgggtttcccccacagtccaaaaacatgtggtataggtgaattgagtaagctaaaatagcccgtcgtgtatgtgtgtgagtgagtgtgtgtgtgtgaatgtttcccagtaccgggttgcagctggaagggcatctgctgcataaaacatatgctggataagttgtcggttcattccgctgtggcgtcctttgattaataaagtaactaagctgaaaagaaaaagattATTTTGATATAAGGGcaccatggtggctcagtggttagcactgtcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAaggtggtcataaacaaataatttctcaattAAAATGAGTAGTGGCTTTGACCTGGAAATAGTATTTCAGGCTTATCAAGTGGATAGGTAAAtaggattaactaaattggctgtagtgtacgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgagttatgggtgtttcccagtactgggttgtgggtAAAAGGGCATGAGCTGcacaaaaacatgctggaatagttggtggttcattccgctgtggagacctctgataaatcagagaataagccgaaggaaattaaacaagtcaatattttaatattattttcagaAGCTTATTTTGCTTAACTAATTTGCAggtaatttagcttgttttgagggAAAACTCAACTtgcttttctgaaaataaaacaaaaatatttactttttagactttttagatatttggactaaaaacaagacaaaaactctaagaaaaTCCTTTTATGCAGTGTTCTGTTTACAATGTGTTTTGTGCATCTTCATGTCGCTGAAGTataaactgattttaaaatatgatgtatatattGTGAATATGTTTTATAACTATGATGAAAtcctcaaatatatatatatatatatatatatatagacatgatCGTTGCAAGATTTTGCTATTTGCTGCCCAACATGCTTTTAATGTAAATGATCTGACAACGGTGCCCTCAGCAGTGTGTTGTGTCAAATTGTCCTCTTTTATATGCCTGTTTTTGAATCCCAATGCAGTCGCCTAAGGAACATCAATCTTCCCAGTGAAAAGCAGTTCCTGTGCTCCACCTGTTTGTCAAACACTCAAAAAATGGCTTCTCGTGTCTAGttcctagtccaaatatctacaattccttaaatcaagaagcttttctagacatttttgttttattttcagtagaAAACAAGTAATAAAGCGAGATTTTCCCTTAAACAAGCTAAATGATCTGCAAGTGGAGTAAGTCAAATAATAGTAATTCTGTTTACCCTACTGGCAGattattaagcttgttttaaggaaaatttattaaaatttattttaaatattagttatttttatattgaatttaagcatttttttcttcagaaaacaaGATTTAGTTGTCTGGAAAACGTTTCTTGatttaaaggtgacctattatgcctcttttcACAAGATGTAAAATACGTCTCTGATGtctccagagtgtgtgtgtgaagtgtcagctcaaaatagcacacagataatgttttataacgctctgaaactgacccttttaagATTTGATCCTAATTGCGGCGTTTTGGTCACTgcctctttaaattcaaatgagattgtgctcttttcaaaagagggcggagctatgaaCATCAATGTGTCAGTAtagcggcagattcaaaactAATGACAGACAGCTGCTTCTTAtttagggctgtttatgctaatgagggagacgTGGTCATTAGTGGGCGGacctttccccctctgatgacatcattcAAAGGGAGAATGTTAAAGTGTTTCAGCAGActgtttggtcccactttatattaagtggccttaactaactaatatgtacttacacaggaattaatagtttgttgcaatgtacttattgtgtaaatacatgtatttactgtgtacttatgcttgattaagtacatgtatgtaattacatctgtatttaacttctgtaattacatttgtaaatacactgttgaccccCCTTTAAACCTTAACcctcccttaaacctacccacaccaccaaacctgtccataacccaacctctatccttactcaaaagcaccacaagtgttctcaaatacatcataaacacagtaagtacattgtatttatttttttgatgtaagtacatagtaaaggacacttaatataaagtgggaccgactgtttttatcaagtgtaattaaaaaaatacaattaatttattgTTCTGTTTAGAAGCTGACTATATTCACTGAtgacacacaactgtttaaaccccttatatacttgatttttgcataataggtccccttttttCGATAGTTGGACTAGAAAGAAAAGGCTTTTCTTGCAGTGTAACCATTAAGAAAAGCCTTGAAAACAGAAGAAATCATTGGTAGATTGACTTCTCAGCTGTTTCTCTGTGATTAACAGATGTTTTTTTGGACACTTTGTGTTTGCTGTAGGATACTAGGCTGGTGTGCAATGTCTCTTGAAACCCAAAATGTCTTGGTTTGTTCAGATCTGTTTTGCGACAAATTAACTTTTGTGCAAAACATTTCGTCAAATAAGCTGATGCTACATTTTtctgaacgttttttttttctgatgtgtaCACAACGAATTCATGAACATTAAAGtgctttattttcttatttttagctTGGATCTGACATTATTTCATAAGGGTTTCCCAATGATGAGGtgttaatattacaaaatattagaaaaaattcACACTTTACTATAAGCTTCAATGcggtaacactttaatttgatggtccatttgagtattagtagactgtctgcttaatatctgctgaaacTGCTGCTGAACAGACATtatactgactataagaaactttgcaaatacatgtcaacttacactaacactaacctgacagtctacttataatctggaGTAAATatagtaaagtaaaataatagtaattctGTTTACCCTCCTGGCAGactttttagcttgttttaaggaaaaacctgCTTaaactttactttattttaattattagttatttcaacacaatctcacggcaattcgtaactttttcatttagtggctaattcgtaataattcgtacgatctaattcgtacaatttagtacgatttgctcatcccccaatgacggttggggttaggggtggggtcaggtgccacgcctcctttttaaaatcgtactatttcgtacgactgaactggtacgaattcgtacgaattagccactaaactggcaaaacgtaaaatacttacgttttctcgtgagatcaggctggttattttTATATTGACTTTACGCATTTCTTTCTTCATAAAACAAGATTTAGTTGTctggaaaatgtttcttgatttaaaggtgacctattatgcctctttttacaagatagcacacagataatgttttataactatcTGAAACGGACCCTTTTAGGATTTGATCTTAATTGCAGTGTTTTGTAATATTCTGGAATATTTACCAGAAATAttccagcagctagctctctgcaactctcacatggtcgcccactgaaactaagcagggctgtgcccggtctgTACCCTG

Function

symbol description
pcdh20 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000036424

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008278 True 6966 mRNA 0.40 2 42910904 42918971

Neighbor

gene id symbol gene type direction distance location
XLOC_004365 NA coding downstream 93200 42809514 ~ 42817704 (-)
XLOC_004364 si:ch73-106k19.5 coding downstream 149611 42746369 ~ 42761293 (-)
XLOC_004363 NA coding downstream 165724 42742534 ~ 42745180 (-)
XLOC_004362 CU459094.2 coding downstream 171756 42731890 ~ 42739148 (-)
XLOC_004361 si:ch73-106k19.2 coding downstream 180841 42720203 ~ 42730063 (-)
XLOC_004367 EML6 coding upstream 10576 42929547 ~ 43002262 (-)
XLOC_004368 NA coding upstream 142911 43061882 ~ 43062986 (-)
XLOC_004369 acyp2 coding upstream 183450 43102421 ~ 43104475 (-)
XLOC_004370 sptbn1 coding upstream 216227 43135198 ~ 43226255 (-)
XLOC_004371 NA coding upstream 282564 43201535 ~ 43204207 (-)
XLOC_004063 CR854846.1 misc downstream 26783226 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 30219213 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 30289137 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 30319608 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 30397642 12512966 ~ 12513262 (-)
XLOC_004356 NA non-coding downstream 758331 42151444 ~ 42152573 (-)
XLOC_004352 NA non-coding downstream 785622 42113072 ~ 42125282 (-)
XLOC_004353 NA non-coding downstream 786633 42121855 ~ 42124271 (-)
XLOC_004372 FO834831.1 non-coding upstream 309441 43228412 ~ 43230364 (-)
XLOC_004373 NA non-coding upstream 536498 43455469 ~ 43457258 (-)
XLOC_004374 NA non-coding upstream 542424 43461395 ~ 43466520 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_01387861_01391135 NA coding CI01000306 null 1387602 ~ 1392321 (+)