LOC118956120 (LOC106958509)


Basic Information

Item Value
gene id LOC118956120
gene name LOC106958509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493863.1
NCBI id JAAXML020000503.1
chromosome length 104963
location 35350 ~ 36291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974193.1
TGAGGTGACATTACGGACCCCTTATAGGGTTTGTGGCATTCCTTGTGTATTTGTTTCCCGTATGTTGCACTTTGTTTCTCCTTTGTACTTGTGACACTATTTGAGGTTTTAACGCCTATCTCTATTAGGTGTGACTGGCAACTGCAGTGGGTTGAATCCTACtagttcagtgtttcccaactccaggcaGGGGTAGAGTAGCCATTTTTTGTGGTAGCCCTGGAGAGGCACAGCTGATTGAAAGAGTTGAATcaggtgcaacaacaacaacaagtagaacaacaccaatcaatgtgaagagtgggacatcacagttgggccttgtgttcaacatagctcagtatttgagtgTGTTTCCCGCGCATGTAAGTAAGTAGCTTTGATTTCTTCTTCCTCCATTGTTCCCTAGAACGAACGCCCTGCCCTCCCCTTTGCAGCAGAGGCCAGGCAAAAGCGCGCGCTTTCTGTGCCACTGGCTTCAATCAGGTCCACCAAACGCAGATAATAAGAGCACCCGAGCACCGAAAATTACGTCATTAATTCACTTGAACTCAGCTAGCGAACACACGATGTCTGGAAGAGGTAAAGGCGGCAAGGGACTCGGAAAAGGAGGCGCTAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCATTCGCCGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACCCGCGGTGTCCTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACGGCCATGGACGTGGTCTACGCTCTGAAACGCCAGGGACGCACCCTGTACGGTTTCGGCGGTTAAACGCACTCTTCTCGGAACGTCAACATCCCGACTtgaacccaaaggctcttttaagagccac

Function

NR:

description
PREDICTED: histone H4-like

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0045653 negative regulation of megakaryocyte differentiation biological_process
GO:0000723 telomere maintenance biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11254 H4; histone H4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974193.1 True 942 mRNA 0.51 1 35350 36291

Neighbor

gene id symbol gene type direction distance location
LOC118956119 LOC107745493 coding downstream 495 34373 ~ 34855 (-)
LOC118956114 LOC106024139 coding downstream 1541 32283 ~ 33809 (-)
LOC118956116 LOC108414267 coding downstream 3384 31043 ~ 31966 (-)
LOC118956115 LOC101068541 coding downstream 4294 30513 ~ 31056 (-)
LOC118956131 LOC106024139 coding downstream 11943 22565 ~ 23407 (-)
LOC118956123 LOC101068541 coding upstream 4047 40338 ~ 43369 (-)
LOC118956121 LOC106906734 coding upstream 4869 41160 ~ 41613 (-)
LOC118956117 LOC107745493 coding upstream 7889 44180 ~ 44662 (-)
LOC118956118 LOC106958509 coding upstream 8866 45157 ~ 46098 (-)
LOC118956126 LOC101068541 coding upstream 13834 50125 ~ 50988 (-)
G2370300 NA non-coding upstream 11399 47690 ~ 47926 (-)

Expression

LOC118956120(LOC106958509) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC118956120(LOC106958509) Expression in each Bioproject

Bar chart with 9 bars.
LOC118956120(LOC106958509) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.

Co-expression Network