XLOC_004376


Basic Information

Item Value
gene id XLOC_004376
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43713710 ~ 43716304 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008874
AAAACAACAATACtgtatttcattaaaaatgtacaaaatatatcTACATGAAACAGCTGAAACATATTTCTGTATACCGAGTTTAAAAGTCCAAGATAATTGGTTGGGTTCAGAGCGTTGCGATCTCTCGGGAGCGCCGTTACGTTTCTTTGATTACatcaataaatcaaaacaaagcaAGACTTTCAAGTGTCATGTTTTACATATCATCATAATATCCTATATGCATATTCACTTTGGAGCCTCTCTTTTGTCTAGTAGAAATGAGCAGAGGACgtttaatattacatttcatttacagCATATACAAAACCTCTTGGTATCCATTGGAGAAGACGCAAAAGATTCAGTCCTGTTCTGCTAATAATAAATCCTGCATTCGCTTGTGCGCAGCGAGGCACTTGTTCCTGCGTTCGCGTCATCAGAAGTCGTATAAAAATACAGGACCGTCGCTAATCAAACTCTCCGTCTGTCTGCTCGTGTGTGCTGTACATACACTGGTCTAAGGCAAAGTATGGCTTCTTGAAGACAACAAAAAGACTCTACCAAAGTCTCGACTAACACTATACAGGATAATACGctcttaaaaagcatttaaaaaaacgtTTATGCATCATTTTGTCCTTGCATGAAGTCActcaggtttttttttcctttcgcaCATTGTATCTGAAATCGCCCCCTGTACCCTTAATAGTGCACTCTTTGTAGTGCTGTCCGAAATAATAGTGGACGCTCCGAAGAGCAATCAATCCAACAATGCACTGCAATAATAAGTGTACAACCCATGTGCACTCAACAGCTAGGAAtgaagcctcattcacactagcatccactttgtagctgcctgtttcTCTGGGTCTGAGCACAGAGAATACAACCAGCCTCTGcaggagctgagagaggatcacgtgagctctaccggtgctccaattggccgacgctcaagaaagttgcttttcatttgcataaagttggaggattctcaactttgtcacgCCCAGCTGATCGCCAACGGTTGCTCTTGCTCGCATAGACGGAGGTCGCCGGAAGTCGCTCACTCTCTGTTGAATTGATATGAACGGTCGCTTGTGGCTTGGCCGCTGTGAGTCGCTCGTAGTGTGTATGAGGATTGAGAGTTTGCACACCAAATTAACTTTATAacttgttattcacagcatatgcaggttctgttcactaaagcagCCGTCATTGGCATGCTACGTGCACGAGTTCTCTGTAGCTCGGGGTCAGCTCACGTGTAATTTTGCGACCGCAAATAAATCATTACATGAGCAGGGCCAGAGCAAgttgaactgccgctctaggcagaggatgaTCACGCcgcccaatgtgaaaacgaaagtgactggTTATTAATATAAAGTGAGGTGTCGCGAACTTCTATTCtaccgccctatgcgcggatataactgaggacgcgcgggtgctgaggcagggagggaggtgtcgcggacaccgcgctctctattctgccgccatATGCGCGGATaaaactgaggacgcgcgggtgctgaggcaGGGAGGGAGATGTCGCGGACaccgcgctctctattctgccgccatATGCGCGGATaaaactgaggacacgcgggtgctgatggaggtgtcgctgacgccgccctctctattctgtcaccTATGCGCCAATAtatctgagggcgcgggtggtgagggaggtgtcgcggacgctgccctctatactgccgccctaggcagccgcctaggttgcctctatggacgcgccggccctgtacatgagacagaaatgacatttctgggtgaattataccttataaatacagtatgtgacactttttatGCCATTTGAGGGTGTTCATGTTCCTGTGCGGCCGCCTTtaagcttctctcctgaccttgaaaataaaaTTGGCTGAATCGAAGAAAAGCTAAATTAAGATCGTGTGtcgggtcgaatcgagatcgtgatcttttttcgattaattgtgcagccctagttgcaacccatatcaaacacacctgcctgtaattatcaagtgctgttcaggtcctaattaactgGTTCGGGTGTGTCCTGGTACGCTGGTCCCCGCCtcagaatgagtgagttttagctacttgtacattaaggaagcgttcagaaaaaacaaaacaccttcgaagaaactcgacacatacataaacacctgctgccagctagtgtttctgaagtgttattgcagagcaacacaaacagcgcgcacTAATcgagtataaatgcacgactatgcCCAGGGCAGGCGCtgtgggtcacgctgatcactccACGCAGacgtataaaccagccttaagccGAAAGAAAGTTAATAAATGAGTTAGTCACTTTaagggtttttttttgtttcagttggctacaaaacaaaccactgttatacaatggcttgc

Function

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0051179 localization biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0030133 transport vesicle cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008874 True 2427 lncRNA 0.46 2 43713710 43716304

Neighbor

gene id symbol gene type direction distance location
XLOC_004375 tmem63bb coding downstream 239886 43470176 ~ 43473824 (-)
XLOC_004374 NA coding downstream 247190 43461395 ~ 43466520 (-)
XLOC_004373 NA coding downstream 256452 43455469 ~ 43457258 (-)
XLOC_004372 FO834831.1 coding downstream 483346 43228412 ~ 43230364 (-)
XLOC_004370 sptbn1 coding downstream 487455 43135198 ~ 43226255 (-)
XLOC_004377 INHBB coding upstream 231787 43948091 ~ 43948885 (-)
XLOC_004378 FP016005.1 coding upstream 303540 44019844 ~ 44030962 (-)
XLOC_004379 FP016005.3 coding upstream 314425 44030729 ~ 44037692 (-)
XLOC_004380 FO704721.3 coding upstream 384035 44100339 ~ 44120354 (-)
XLOC_004381 FO704721.2 coding upstream 407023 44123327 ~ 44123458 (-)
XLOC_004063 CR854846.1 misc downstream 27586032 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 31022019 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 31091943 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 31122414 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 31200448 12512966 ~ 12513262 (-)
XLOC_004371 NA non-coding downstream 509503 43201535 ~ 43204207 (-)
XLOC_004368 NA non-coding downstream 650724 43061882 ~ 43062986 (-)
XLOC_004387 NA non-coding upstream 668510 44384814 ~ 44385749 (-)
XLOC_004389 NA non-coding upstream 731391 44447695 ~ 44450349 (-)
XLOC_004390 NA non-coding upstream 734936 44451240 ~ 44451660 (-)

Expression


Co-expression Network