XLOC_004380 (FO704721.3)


Basic Information

Item Value
gene id XLOC_004380
gene name FO704721.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44100339 ~ 44120354 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008292
GAGTGTTCATGTCCATGATAaaagtataaacaaacaaacaaacaaacaaacaaacaaacagtgttACACATTCTGTCCTGAACACACTCTGCAGTGTGCATCTAGTGAGCAGTGAGCAAGTGCTCCATCCTGAACAcagccggtgtgtgtgtgtttaagtgtgtatgGCTCCTCCCACTGAGGGCAGGGCTTTATCAGCTATAGATCAGCTTTctctcaccacacacacacacatacacacacacacacacacacactcagggagGAGTCGTGTGCTGGTGTCCGAGGCTCATTCAGGATGAAATGTGTGTGAAAGCTTGAGGAGATGTTGAGGAAACTGGTGTGCCGGAGGATCTGTGCATaTAAGAACATTGATGATGAAGACTCAGTGGATGGAGGTCGATCCTCATCATCCTCTAAAGGAGCTTCAGTACGGAGAACAGGATCCACACGCAGACCCAGCTCCGCCTCCAGCAGACCAAGCTCCGCCTCCAGGAGACCAAGCTCTGGTAAAGAGAGCTGTGGTGCCGGAGCTGTGGATGAAGAAGACTTCATTCGTGCCTTTGAAGATGTGCCGACTGTACAGATATACTCAGCCCGAGAGCTGGAAGACTCCATCAATAAGGTCCGGGAGATTCTGTCTGATGAAAAACACGACTGGGAGCAGAGAGTGGCCGCTCTGAAGAAGGTTCGCTCTCTGCTGTTGGCCGGCGCGGGCGATTATGATGGTTTTTGTCATCATTTGCGGCAGCTGGACGCAGCTTTCAAGCTGTCGGCTAAAGATCTGCGCTCTCAGGTGGTGCGCGAGGCCTGCATAACACTCGGGTATGTGTGTGTACACTctataaaatgctgggtttcacacaattggtttgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgcgctataggggaactgatgaactaaattgatgagtgtgtatgggtgtttcccagttctgggttgcagctggaagggcatccgctttgtaaaacatatgctaaaatagttggtggttcattctgctgtggcgacccttcttgaataaagggactaagctgaaggaaaatgaatgatcttTATTTACAAATGCCTAGTTATAGATAAGTTTGCTTTGTTCATACATAATAAAAGTCTTCTTTTGTGATGATTTCCTGATATCTGCTCAGCTTTAGCTCCATCTGTAGAGTTTAACACCGCTGCAGAGCCACTGCTGACAGATGCTGACAGACTCACTTTAATGAAAACAGCCAATTACTCTAAGTGTTCTGCTTTTAAACACTGGACACGTTccaacactgcacacacacacatacacacacacgcacgcacattcTACTGATGGGCTGTGTTTCAAACTGTGCTTCACCGTCTACATAGTCAACTACCTTGAAAGGCGACATCACTGCAgaaataaaattaacataaataaaattaaaataaatattgcatttaaaaaagagacaaaaaatgtatttatagtcAGAATTATGCAAAGATTATTACTTAAAGCTTTAATTAGATTAAAGATACACTTAATAAGGGCAGCAccgtggctcagtagttagcactgtggcctcacagcaagaaggttgctggtttgagtcccggctgggtctgttggctttcctgtgtggagtttgaatgttctccccgtgttggcatgggtttccttcgggtgctccggtttcccccacagtccaaacacatgcactataggggcactgatgaactaaactggtcgtagtgtatgagtgtgtgaatgagtgtgtatgggtgtttcccagttctgggatgcagctggaagggcatccgctgtgtaaaacatatgctggaatagttggcggttcattacgctgtggcaacccctgatgaataaagggactaagccgaagaaaaatgaatgaatgaatgaatacacacaATAATGGTTAGAGtagggtgtttt
>TCONS_00008293
ATGACAGCAGGAGACGaTAAGAACATTGATGATGAAGACTCAGTGGATGGAGGTCGATCCTCATCATCCTCTAAAGGAGCTTCAGTACGGAGAACAGGATCCACACGCAGACCCAGCTCCGCCTCCAGCAGACCAAGCTCCGCCTCCAGGAGACCAAGCTCTGGTAAAGAGAGCTGTGGTGCCGGAGCTGTGGATGAAGAAGACTTCATTCGTGCCTTTGAAGATGTGCCGACTGTACAGATATACTCAGCCCGAGAGCTGGAAGACTCCATCAATAAGGTCCGGGAGATTCTGTCTGATGAAAAACACGACTGGGAGCAGAGAGTGGCCGCTCTGAAGAAGGTTCGCTCTCTGCTGTTGGCCGGCGCGGGCGATTATGATGGTTTTTGTCATCATTTGCGGCAGCTGGACGCAGCTTTCAAGCTGTCGGCTAAAGATCTGCGCTCTCAGGTGGTGCGCGAGGCCTGCATAACACTCGGGTATGTGTGTGTACACTctataaaatgctgggtttcacacaattggtttgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgcgctataggggaactgatgaactaaattgatgagtgtgtatgggtgtttcccagttctgggttgcagctggaagggcatccgctttgtaaaacatatgctaaaatagttggtggttcattctgctgtggcgacccttcttgaataaagggactaagctgaaggaaaatgaatgatcttTATTTACAAATGCCTAGTTATAGATAAGTTTGCTTTGTTCATACATAATAAAAGTCTTCTTTTGTGATGATTTCCTGATATCTGCTCAGCTTTAGCTCCATCTGTAGAGTTTAACACCGCTGCAGAGCCACTGCTGACAGATGCTGACAGACTCACTTTAATGAAAACAGCCAATTACTCTAAGTGTTCTGCTTTTAAACACTGGACACGTTccaacactgcacacacacacatacacacacacgcacgcacattcTACTGATGGGCTGTGTTTCAAACTGTGCTTCACCGTCTACATAGTCAACTACCTTGAAAGGCGACATCACTGCAgaaataaaattaacataaataaaattaaaataaatattgcatttaaaaaagagacaaaaaatgtatttatagtcAGAATTATGCAAAGATTATTACTTAAAGCTTTAATTAGATTAAAGATACACTTAATAAGGGCAGCAccgtggctcagtagttagcactgtggcctcacagcaagaaggttgctggtttgagtcccggctgggtctgttggctttcctgtgtggagtttgaatgttctccccgtgttggcatgggtttccttcgggtgctccggtttcccccacagtccaaacacatgcactataggggcactgatgaactaaactggtcgtagtgtatgagtgtgtgaatgagtgtgtatgggtgtttcccagttctgggatgcagctggaagggcatccgctgtgtaaaacatatgctggaatagttggcggttcattacgctgtggcaacccctgatgaataaagggactaagccgaagaaaaatgaatgaatgaatgaatacacacaATAATGGTTAGAGtagggtgtttt
>TCONS_00008294
GTCTTGTAATAAGCTTTTATATGATGTATTATTGAATAGAAATGGTTTTGTTAATCAGTGTTTGCTTGGTCTTGTGTTCCTCCATTCATGATCTGTTTGTCTTGGTTGTGTTTTGCAGGTTGAATGTGATTTTCAGCAGGTTTGATGACGTTCAGCGGTCTGGACTCATGATTGTGTGTGCCGaTAAGAACATTGATGATGAAGACTCAGTGGATGGAGGTCGATCCTCATCATCCTCTAAAGGAGCTTCAGTACGGAGAACAGGATCCACACGCAGACCCAGCTCCGCCTCCAGCAGACCAAGCTCCGCCTCCAGGAGACCAAGCTCTGGTAAAGAGAGCTGTGGTGCCGGAGCTGTGGATGAAGAAGACTTCATTCGTGCCTTTGAAGATGTGCCGACTGTACAGATATACTCAGCCCGAGAGCTGGAAGACTCCATCAATAAGGTCCGGGAGATTCTGTCTGATGAAAAACACGACTGGGAGCAGAGAGTGGCCGCTCTGAAGAAGGTTCGCTCTCTGCTGTTGGCCGGCGCGGGCGATTATGATGGTTTTTGTCATCATTTGCGGCAGCTGGACGCAGCTTTCAAGCTGTCGGCTAAAGATCTGCGCTCTCAGGTGGTGCGCGAGGCCTGCATAACACTCGGGTATGTGTGTGTACACTctataaaatgctgggtttcacacaattggtttgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgcgctataggggaactgatgaactaaattgatgagtgtgtatgggtgtttcccagttctgggttgcagctggaagggcatccgctttgtaaaacatatgctaaaatagttggtggttcattctgctgtggcgacccttcttgaataaagggactaagctgaaggaaaatgaatgatcttTATTTACAAATGCCTAGTTATAGATAAGTTTGCTTTGTTCATACATAATAAAAGTCTTCTTTTGTGATGATTTCCTGATATCTGCTCAGCTTTAGCTCCATCTGTAGAGTTTAACACCGCTGCAGAGCCACTGCTGACAGATGCTGACAGACTCACTTTAATGAAAACAGCCAATTACTCTAAGTGTTCTGCTTTTAAACACTGGACACGTTccaacactgcacacacacacatacacacacacgcacgcacattcTACTGATGGGCTGTGTTTCAAACTGTGCTTCACCGTCTACATAGTCAACTACCTTGAAAGGCGACATCACTGCAgaaataaaattaacataaataaaattaaaataaatattgcatttaaaaaagagacaaaaaatgtatttatagtcAGAATTATGCAAAGATTATTACTTAAAGCTTTAATTAGATTAAAGATACACTTAATAAGGGCAGCAccgtggctcagtagttagcactgtggcctcacagcaagaaggttgctggtttgagtcccggctgggtctgttggctttcctgtgtggagtttgaatgttctccccgtgttggcatgggtttccttcgggtgctccggtttcccccacagtccaaacacatgcactataggggcactgatgaactaaactggtcgtagtgtatgagtgtgtgaatgagtgtgtatgggtgtttcccagttctgggatgcagctggaagggcatccgctgtgtaaaacatatgctggaatagttggcggttcattacgctgtggcaacccctgatgaataaagggactaagccgaagaaaaatgaatgaatgaatgaatacacacaATAATGGTTAGAGtagggtgtttt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0061387 regulation of extent of cell growth biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0001755 neural crest cell migration biological_process
GO:0006935 chemotaxis biological_process
GO:0050919 negative chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030182 neuron differentiation biological_process
GO:1990138 neuron projection extension biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:1902667 regulation of axon guidance biological_process
GO:0120035 regulation of plasma membrane bounded cell projection organization biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0010975 regulation of neuron projection development biological_process
GO:0010977 negative regulation of neuron projection development biological_process
GO:0010721 negative regulation of cell development biological_process
GO:0031344 regulation of cell projection organization biological_process
GO:0031345 negative regulation of cell projection organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048588 developmental cell growth biological_process
GO:0001558 regulation of cell growth biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0010769 regulation of cell morphogenesis involved in differentiation biological_process
GO:0010771 negative regulation of cell morphogenesis involved in differentiation biological_process
GO:0048638 regulation of developmental growth biological_process
GO:0048640 negative regulation of developmental growth biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0050770 regulation of axonogenesis biological_process
GO:0050771 negative regulation of axonogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0030030 cell projection organization biological_process
GO:0045926 negative regulation of growth biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0032502 developmental process biological_process
GO:0048675 axon extension biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0042330 taxis biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0008361 regulation of cell size biological_process
GO:0031175 neuron projection development biological_process
GO:0016049 cell growth biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0051961 negative regulation of nervous system development biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117425

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008292 False 2000 lncRNA 0.46 5 44100339 44108669
TCONS_00008293 False 1654 lncRNA 0.46 5 44100339 44116448
TCONS_00008294 True 1821 lncRNA 0.45 5 44100339 44120354

Neighbor

gene id symbol gene type direction distance location
XLOC_004379 FP016005.3 coding downstream 62647 44030729 ~ 44037692 (-)
XLOC_004378 FP016005.1 coding downstream 69377 44019844 ~ 44030962 (-)
XLOC_004377 INHBB coding downstream 151454 43948091 ~ 43948885 (-)
XLOC_004376 NA coding downstream 384035 43713710 ~ 43716304 (-)
XLOC_004375 tmem63bb coding downstream 626515 43470176 ~ 43473824 (-)
XLOC_004381 FO704721.2 coding upstream 2973 44123327 ~ 44123458 (-)
XLOC_004382 clcn4 coding upstream 24258 44144612 ~ 44163164 (-)
XLOC_004383 SHROOM2 coding upstream 58206 44178560 ~ 44214767 (-)
XLOC_004384 CABZ01112732.1 coding upstream 145368 44265722 ~ 44276686 (-)
XLOC_004385 LOXL4 coding upstream 216803 44337157 ~ 44339220 (-)
XLOC_004063 CR854846.1 misc downstream 27972661 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 31408648 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 31478572 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 31509043 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 31587077 12512966 ~ 12513262 (-)
XLOC_004374 NA non-coding downstream 633819 43461395 ~ 43466520 (-)
XLOC_004373 NA non-coding downstream 643081 43455469 ~ 43457258 (-)
XLOC_004372 FO834831.1 non-coding downstream 869975 43228412 ~ 43230364 (-)
XLOC_004371 NA non-coding downstream 896132 43201535 ~ 43204207 (-)
XLOC_004387 NA non-coding upstream 264460 44384814 ~ 44385749 (-)
XLOC_004389 NA non-coding upstream 327341 44447695 ~ 44450349 (-)
XLOC_004390 NA non-coding upstream 330886 44451240 ~ 44451660 (-)
XLOC_004393 NA non-coding upstream 402452 44522806 ~ 44524930 (-)

Expression


Co-expression Network