XLOC_004385 (LOXL4)


Basic Information

Item Value
gene id XLOC_004385
gene name LOXL4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44337157 ~ 44339220 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008303
GAACGGCACGAGGGTCGCAGAAGGTCACAAGGCCAGCTTCTGTCTGGAGGACACGTACTGCCCtgaaggTCTGACCAAGCGCTACGCCTGCTACAACATGGGTGATCAGGGCATCACAGTGGGCTGCTGGGATACGTACAGACACGACATTGACTGCCAGTGGGTGGACATCACTGACGTCAGGCCCGGGAACTACATCTTCCAGGTGGAGGTGAACCCGTCTCTGGATATGGCGGAGTCTGATTTCCAGAATAATGTGATGCGCTGCAGATGTCGGTACGATGGTGGACGAGTCTATCTGTACAGCTGCCACACAGGTGACGCCTACAGTGCAGCAGCAGAGGACCTGTTTGAACACCGGCAGGAGATCACTAACAACTTCCTGTGACGACGGCAGCGATGGACTGCAGACTCATCACCAATCTCTAACAGCTCGCGAGGTGGTGGGGGGTGGAGTCTATGATTGACAGGGGAGTGGGTGGGGCTAAAGTGATGATTGACAGGCAGGGGTCGTTTACACTCAGCCACGTGTTCATTTCAGCCAGTGTTGATGAAGATGCTGAGTGAGGATCAGTCCAGATGAAGGATTTTCACAGATCACAGGTCCGCTCGGCATCTTTATATAGTTTAGTGTTTATCACCAATTCAACATTCAGAGGGGGAAAGTCCACTAAAACAGTAAACATTAGTCACCAATTGTGTTCAGGATGCAGCAATCTGAAgtaaacttacaaaaaaaatgGTCTCAGAGGTGTGCTTCTTGTGTTGATCAGTTTCCTAATGCGCAGGTTTATTTGAGGGATCTTTCAGGATGTTCATGTGTTGGTTCTGTTGGGGAGAACTTTATTATATTGTTTCTCTGTAGGTCAACTGCTGAATCAGGGTTAATTTCTGCCAATAAAATCATGAATAAAAATCAGATTTTGAGGAGGGTGAGATTGAGAACCGCTGCTGCAGGTT

Function

symbol description
loxl4 Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. Orthologous to human LOXL4 (lysyl oxidase like 4).

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0018057 peptidyl-lysine oxidation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080722-19 Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. Orthologous to human LOXL4 (lysyl oxidase like 4).

Ensembl:

ensembl_id ENSDARG00000105442

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008303 True 960 processed_transcript 0.49 4 44337157 44339220

Neighbor

gene id symbol gene type direction distance location
XLOC_004384 CABZ01112732.1 coding downstream 60471 44265722 ~ 44276686 (-)
XLOC_004383 SHROOM2 coding downstream 122390 44178560 ~ 44214767 (-)
XLOC_004382 clcn4 coding downstream 173993 44144612 ~ 44163164 (-)
XLOC_004381 FO704721.2 coding downstream 213699 44123327 ~ 44123458 (-)
XLOC_004380 FO704721.3 coding downstream 216803 44100339 ~ 44120354 (-)
XLOC_004386 LOXL4 coding upstream 992 44340212 ~ 44347587 (-)
XLOC_004387 NA coding upstream 45594 44384814 ~ 44385749 (-)
XLOC_004388 il1rapl1b coding upstream 61644 44400864 ~ 44409856 (-)
XLOC_004389 NA coding upstream 108475 44447695 ~ 44450349 (-)
XLOC_004390 NA coding upstream 112020 44451240 ~ 44451660 (-)
XLOC_004063 CR854846.1 misc downstream 28209479 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 31645466 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 31715390 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 31745861 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 31823895 12512966 ~ 12513262 (-)
XLOC_004376 NA non-coding downstream 620853 43713710 ~ 43716304 (-)
XLOC_004374 NA non-coding downstream 870637 43461395 ~ 43466520 (-)
XLOC_004373 NA non-coding downstream 879899 43455469 ~ 43457258 (-)
XLOC_004393 NA non-coding upstream 183586 44522806 ~ 44524930 (-)
XLOC_004395 NA non-coding upstream 262641 44601861 ~ 44603625 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003059 NA coding CM030139.1 CM030139.1 10624960 ~ 10647910 (-)