XLOC_004389


Basic Information

Item Value
gene id XLOC_004389
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44447695 ~ 44450349 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008876
ACCTGAATTACAAATATCAAGTGCTCGTCCTTCGAATATACATGAACGTGTTTTAATTGAAAACAAGTAACTGGTTATTTTGTTTTGGTATAATTTTCCTTAGATGAAATAAACCTACATACCCATATGTACATGAATCACACACATTAAATGAGTCAATAAAACTGaacatgttttttgagatatggtTAAAAGTCTTTTTATTGGTTACAATATCAGTGTATGGCAGCATCATCACCATGTTACTTTACAAATACCAAAAAAGTTGAGaaacaaaatgttattaaaaatgattatttgaAAATATGGCACTGTAAAGGTACACAAGGCACCACACTCCTGCTTTTAATGgctcaaataaaacaaactcATGTAAGATACAATTGAGCCAAAAGTATATTGTGAATACTTAAAGCATCAGGGTTCAGGCAAGTAATTCTAACATGCTCTGAGTTTGAGTGGTTTGGCTTGTTGAACATTTGGAAATATTGTCAAAATCTAAACTCATGTTAAAATTGTTGGTTTTGATTGGTTCAGAACCAACCACTGAAACCTTCAACATGTTTATAACAAAACATCCACAGAAATAATCACTGATTAGCAATCTTGCAACCTCTACAGTCCTAACCATAGACATCTGACTTAAATCTAACCAATACTTATAACACCAGCAGATAAATTCCTGTTTAAATTGTTGACTTAAAAGTGAGACATAATTACTTAAAACGCATCCCTTTTCACAGTTAATCATCCCAAAAcatcataaaaacaataataataaaaaaactgatctTTATGGTGTGTTAATCAGCTCAGAGCAATGCAAGGGTGTTTATTtacgcaaaaaaacaaaaagcatctTCATACGGTCAAAGGACGAAAATACACTTAATACCTCAAAATAATTTCAAGCTGCTTTCCGATTCCCTTTTATATAAAAATGCGAAGAGAAAGATTGTAAATGCTGTTCACAGTTATATGAGGTGTTAAGAGCGTCAACAATGgcacaaatattattttttaattcaggcTTGTTAAGGTGAAAGAGCTGGACTCAAACACCGTTTCTATTTGAAAAACAGAGATTTGTTAGAACCGATGGcacttatacatatatatatatggcgaaAGTGAGTAAACGGCTTCATCGCTCTTTTCtataattattatacaaaaatTAATCCAAATAGAGTGACTCTGATTCATCATCCTGGCCAGGTAGTGTTCTTCATTTCCACCCGTATCACCATTCAGATCAATCCAATTTAGCTTAATATAGAAAACCAAAAATGTATACTGTTTACCGTAGTGCTGTTAAACGATCAACTCGCAACTaatcacaaaataaaagtttgtattggAATGAGTGTAcggtgtatatttattatgtatatagaATTGTACACATctatctacactctcagaaataaaggtatgtgagcgtcttTCTGTCGGTctatagctgaagtcagaattattagccccccgtttattttttccccaatttgtgtttaacagaaaagaacacatttcaacatttctaatcataatagtgttaataactcatctctaataactggatttattttatctattgtcatggatgacagcacataatattaaactagatattcttcagacactagtgttcagcttaaagtgacatttaaaggcttcactagggtaattaggttaactaggcaggttagggtaattaggcaagttattatgtaCCGATTgtttgttcggtagactatcgagaaaaaaatattgcttaaaggggctaataattttgtccttaaaatggtgtttagaaaattaaaaactgcttttattttagccgaaataaaacaaataaaggcccgtgcacactggGATGATTTTTGCTCGGGTTTTCTGTTGACGTTTAACCCCTTGTGattaaataaagggcgtcaatgtgattgtgcacaccaacgcacaaaacggcaggcgcaaaagcgtaatttttaaagaaacgcctcatgctcatttttttttttttttttacgccacGTAAAAACCTcctccaatcagattggcacaTTTGTTTGTCACTGGTGAACAATAGTCATTTCATCATCGCTAGAGctagagctgctgcttgaaccatccatgcttgtacGAATCGCTAGTAACTTTAACAAGTTATAAGAGGGtatcagaagcttaaagttgtgtcgcactcttctgctcgacgccagtgaaaaatcgcttgggtttgaatccagaaAAACGTCTCGAAAATGCTGACaataaacgcaaatgaaaagcatcccaGTGTACAGctttaagactttctccagaagaaaaaatattatcagacataccgtgaaaatttcctgaatctaaaaaataataataaattcaaaggagggctaaaaattctgacttcaactctatgtatctatccatccatccatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008876 True 2499 lncRNA 0.33 2 44447695 44450349

Neighbor

gene id symbol gene type direction distance location
XLOC_004388 il1rapl1b coding downstream 37839 44400864 ~ 44409856 (-)
XLOC_004387 NA coding downstream 61946 44384814 ~ 44385749 (-)
XLOC_004386 LOXL4 coding downstream 100108 44340212 ~ 44347587 (-)
XLOC_004385 LOXL4 coding downstream 108475 44337157 ~ 44339220 (-)
XLOC_004384 CABZ01112732.1 coding downstream 171009 44265722 ~ 44276686 (-)
XLOC_004390 NA coding upstream 891 44451240 ~ 44451660 (-)
XLOC_004391 mfn1b coding upstream 1884 44452233 ~ 44485762 (-)
XLOC_004392 si:ch1073-365p7.2 coding upstream 41413 44491762 ~ 44499007 (-)
XLOC_004393 NA coding upstream 72457 44522806 ~ 44524930 (-)
XLOC_004394 gpr137bb coding upstream 76543 44526892 ~ 44543082 (-)
XLOC_004063 CR854846.1 misc downstream 28320017 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 31756004 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 31825928 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 31856399 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 31934433 12512966 ~ 12513262 (-)
XLOC_004381 FO704721.2 non-coding downstream 324237 44123327 ~ 44123458 (-)
XLOC_004380 FO704721.3 non-coding downstream 327341 44100339 ~ 44120354 (-)
XLOC_004376 NA non-coding downstream 731391 43713710 ~ 43716304 (-)
XLOC_004374 NA non-coding downstream 981175 43461395 ~ 43466520 (-)
XLOC_004395 NA non-coding upstream 151512 44601861 ~ 44603625 (-)
XLOC_004398 NA non-coding upstream 266479 44716828 ~ 44722331 (-)
XLOC_004399 BX569779.1 non-coding upstream 300586 44750935 ~ 44756483 (-)

Expression


Co-expression Network