XLOC_004398


Basic Information

Item Value
gene id XLOC_004398
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44716828 ~ 44722331 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008882
CCAAAATATCTTCTCCTGTGATCAACAACAAATAAAAGTGGGAAagaaggctgagtaaatgatgacaggagtTTTCATTTTTACATGAGCTATTCCCATTATCTGCAGTCATCTGTAAATCCCTTGCTGAGCAATATCTAACCTCAGATctttatttagatttaatgttattgtttaaaaaatcaaGTTTAATCACTTTTTAAGGCTCCGCAGTTCACAGGACCTGCAAAACAGTATTGACCCATTTACCAAAGCTGCTTAAAGTGCACTACTGAGggctgtgtgtaaatgtgatcttagaaCCCTCAGAGTTCCACATTCCAGCGCTGCTGCCAACGCAACGTCACGCGCCACCGCATCCCTTTAACTCTTCCATAACCCCaaacacataaaacaacacaactgCTGCAATAAGGCTTCGACTCGGACGCGGTTTAGAGAAATTACAGCAGCTTTCGTTGGAGTTTTTAATCATTCCAGCAGTAGTGCACTTGGGAGCCGTTTTGCGTCTGGAATATCTGCACTGGTAGATTATTCATCAGAACTGGACTTCGTTCAGCCTCAAAGCCTGATTCAAGCCTGCCAAGAAGAGCATGTGATTCATGATGGCTGGCAAAATTATGGAAAGTCCCACAGCGAAGACAACGAGTCTAGACCACGTGGTTCTGCATTTCCAAATTCTTTTTTTTGTCATCCGTTTATATGTGACTCATGACTGAAAGCGAGTTAGGCAATCACTTCACCTCGGATACATGTGGGTCATAGTGTGCAgcaaaatgaaagtgttttaacATTTGGGAACACAGCAGTTGGACTTAAAATATCTTGTAAATGGATTTTCACTCTTAAATTGACAgtcaattaatatatattaataatactgaTCCATTTATTTAAGAATCACTACcattttatttaactgttaaAGAGGTAGCGCACACAAaaataaattctgtcatcatttacatctgttccaaacctgtttgagcctTCTGTTCAACAGTTTTGGAAGAGAATCATTGGTATTTTTGCCTCCAACCATGGCATATTTTcattcagcattcttcagaatatcttgttttgagtTCAAAGTTATAAATCATTTTGAGTGTGAGTAAACAGTACAGAAATATTCCTTTATtaggtgatctatccctttaaacgGTTACACCAATCATCTTGTTTTATTTCCAAATTTACAATAGAGTAATACATGTGCAAATATGTAGAttggaaatgtttttattaatgaaaTGGGGAATTCAACACAGTAAGAATTAAAGCGATATGCAGTTTTTCCGTCTGCCTGAATGTCTTTCCGATCAGCACACAAAGCTGATTTTCTCGGGCGAGGCGATTCGGGAGCCGCAGGCACCGAGTGGGACTTGTTTTTGCAGGCACTCATGAGGAAGTAAGAGAGTTAGGCACGTACCTCACCCATCCGTGGAAAAACAAACCAACCCTACTGGCAGACGGCCAGAGATCTGTGAACATGCTCTGCTGGACGAGTCGCTGCAAAGCCAGAAAACACGCTGACAGTACTACATCAGCAAAAGGAAAAGAGAGCAGAAATCCAATTCAGCGTTGCACAGGCTTTAATGAGCCCCTTCTGAGGTTTTCCGGGAATTGTGGGCCAGACGGATCTTTTCCTCTGACAGAATGAGCGAGTGTGTCCTGCTTTAACTGAGTCACATGGGAGGAGCTGAACTCATCCAGACTGCAGAGATTGGCTTCGACACTGAGAAAGACAATATAGATGATCTCAGCCATCGGAAAACTCAGACAAAACACGCCTGGATTGGGGGATTTGAGCTTAATGTAACTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008882 True 1827 lncRNA 0.41 2 44716828 44722331

Neighbor

gene id symbol gene type direction distance location
XLOC_004397 tomm20b coding downstream 69513 44637516 ~ 44647315 (-)
XLOC_004396 tbce coding downstream 94350 44605727 ~ 44622478 (-)
XLOC_004395 NA coding downstream 113203 44601861 ~ 44603625 (-)
XLOC_004394 gpr137bb coding downstream 173746 44526892 ~ 44543082 (-)
XLOC_004393 NA coding downstream 191898 44522806 ~ 44524930 (-)
XLOC_004399 BX569779.1 coding upstream 28604 44750935 ~ 44756483 (-)
XLOC_004400 map1lc3c coding upstream 75725 44798056 ~ 44801968 (-)
XLOC_004401 NA coding upstream 130251 44852582 ~ 44858601 (-)
XLOC_004402 opn6a coding upstream 136648 44858979 ~ 44876005 (-)
XLOC_004403 eif4a3 coding upstream 156240 44878571 ~ 44898129 (-)
XLOC_004063 CR854846.1 misc downstream 28589150 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 32025137 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 32095061 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 32125532 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 32203566 12512966 ~ 12513262 (-)
XLOC_004390 NA non-coding downstream 265168 44451240 ~ 44451660 (-)
XLOC_004389 NA non-coding downstream 266479 44447695 ~ 44450349 (-)
XLOC_004387 NA non-coding downstream 331079 44384814 ~ 44385749 (-)

Expression


Co-expression Network