XLOC_000044


Basic Information

Item Value
gene id XLOC_000044
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2023409 ~ 2023645 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002808
ctcaaaaatgaaaattcagtcatcatttattcaccttttACTCGTTTTAACCTTTTCtcacgagtttctttcttctgctaaacactaaagaagatattttaaatataatataaagaagaaaaatgttggaaccctaaaaccattgacttccacagtatttgttttattatagaagtcaatggttgcaggttttcagaaAAAACAAATCTTTGGCGTATAAGAAACTTAGAAATGTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002808 True 237 lncRNA 0.28 1 2023409 2023645

Neighbor

gene id symbol gene type direction distance location
XLOC_000043 NA coding upstream 17777 2001716 ~ 2005632 (+)
XLOC_000042 si:ch211-132g1.7 coding upstream 23052 1941031 ~ 2000357 (+)
XLOC_000041 si:ch211-132g1.1 coding upstream 100156 1915967 ~ 1923253 (+)
XLOC_000040 si:ch211-132g1.4 coding upstream 112028 1904419 ~ 1911381 (+)
XLOC_000039 si:ch211-132g1.6 coding upstream 123561 1896737 ~ 1899848 (+)
XLOC_000045 slc5a3a coding downstream 1440 2025085 ~ 2027100 (+)
XLOC_000046 mbnl2 coding downstream 77896 2101541 ~ 2217861 (+)
XLOC_000047 rap2ab coding downstream 198718 2222363 ~ 2240119 (+)
XLOC_000048 kpnb3 coding downstream 236762 2260407 ~ 2299553 (+)
XLOC_000049 CR352215.1 coding downstream 251960 2275605 ~ 2275742 (+)
XLOC_000034 NA non-coding upstream 404095 1617203 ~ 1619314 (+)
XLOC_000032 NA non-coding upstream 445158 1571847 ~ 1578251 (+)
XLOC_000031 NA non-coding upstream 662578 1358731 ~ 1360831 (+)
XLOC_000030 NA non-coding upstream 681172 1315289 ~ 1342237 (+)
XLOC_000051 CR352215.2 non-coding downstream 379458 2403103 ~ 2403224 (+)
XLOC_000053 NA non-coding downstream 1695021 3718666 ~ 3720603 (+)
XLOC_000054 CABZ01063288.1 non-coding downstream 1736279 3759924 ~ 3760034 (+)
XLOC_000056 FO744838.1 non-coding downstream 2574415 4598060 ~ 4680477 (+)

Expression


Co-expression Network