XLOC_004419


Basic Information

Item Value
gene id XLOC_004419
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 65644 ~ 67780 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010711
GGGCGCGTTGATGATGGAGATGTTGTAGCCGTACTGAAACGTGCCTCCGATAGCTGCAGAACACACGGTGAACGCCAGAGTGCGCGTCCAGCCCGCCCGCTTCACAGACTCACCCATTATAAACACATCAGTCCTCGAGCATCTACACAGACAAGGAGAACCGAGCAGCTCACGCGGGATAATCCGCACCGTCACCGAACAACTGTGAAAAGCCCAGGAGACGAGCGCGGACGGCGATCTGTCATTGACTAGCGCACGCGGAACTTCCGCAAACATGACGTCAGCGCGTCGCTCGTTCATAATAAAAGTCCGAGCGCGGCGTCGGTATTAAAGGTACTCCAGCCCGACAAATGTAGATCAGCAATTCATACACCGAGAGATAAAGCAGAGGAACAGCTGGCCATCATAGACGAGCAGAAGATTTATAAGATTTGTGTACTGGAGAGAAAGCTGCTGGGTCAGGATAAATGGATGAGTGTAGCCACCTGCCAAAGTCACCTGGAGCCCATAACACAGCATAACAACACAACACCTACACAAGAGCTGTAGTCCTTATGACACCTCTACAAGGTCAATGTACCAGTGATGGTGACCCGCGGAGCTCAGCACGT
>TCONS_00010712
GAGATGTTGTAGCCGTACTGAAACGTGCCTCCGATAGCTGCAGAACACACGGTGAACGCCAGAGTGCGCGTCCAGCCCGCCCGCTTCACAGACTCACCCATTATAAACACATCAGTCCTCGAGCATCTACACAGACAAGGAGAACCGAGCAGCTCACGCGGGATAATCCGCACCGTCACCGAACAACTGTGAAAAGCCCAGGAGACGAGCGCGGACGGCGATCTGTCATTGACTAGCGCACGCGGAACTTCCGCAAACATGACGTCAGCGCGTCGCTCGTTCATAATAAAAGTCCGAGCGCGGCGTCGGTATTAAAGGTACTCCAGCCCGACAAATGTAGATCAGCAATTCATACACCGAGAGATAAAGCAGAGGAACAGCTGGCCATCATAGACGAGCAGAAGATTTATAAGATTTGTGTACTGGAGAGAAAGCTGCTGGGTCAGGATAAATGGATGAGTGTAGCCACCTGCCAAAGTCACCTGGAGCCCATAACACAGCATAACAACACAACACCTACACAAGAGCTGTAGTCCTTATGTACAAATAAAAGACACCTCTACAAGGTCAATGTACCAGTGATGGTGACCCGCGGAGCTCAGCACGT

Function

GO:

id name namespace
GO:0009060 aerobic respiration biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0070013 intracellular organelle lumen cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0017154 semaphorin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010711 False 611 lncRNA 0.53 3 65644 67780
TCONS_00010712 True 607 lncRNA 0.52 3 65660 67780

Neighbor

gene id symbol gene type direction distance location
XLOC_004418 mrpl58 coding upstream 15724 47439 ~ 49920 (+)
XLOC_004420 CABZ01102038.1 coding downstream 129644 197424 ~ 202640 (+)
XLOC_004421 NA coding downstream 212361 280141 ~ 281265 (+)
XLOC_004422 NA coding downstream 219653 287433 ~ 288561 (+)
XLOC_004423 CABZ01058222.1 coding downstream 224672 292452 ~ 330202 (+)
XLOC_004424 rcvrnb coding downstream 248458 316238 ~ 319392 (+)
XLOC_004426 CT737227.1 non-coding downstream 342258 410038 ~ 459295 (+)
XLOC_004429 NA non-coding downstream 474929 542709 ~ 543010 (+)
XLOC_004433 NA non-coding downstream 824398 892178 ~ 895643 (+)

Expression


Co-expression Network