XLOC_004420 (CABZ01102038.1)


Basic Information

Item Value
gene id XLOC_004420
gene name CABZ01102038.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 197424 ~ 202640 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008885
atgtgtTCCAAAACTCAGCAGATGGAGATTAAAGTCAACAGTAAGACGGAGGAGGACATCAAGAAAGCGCGACGGAAATCCACACAGGCGGgtgaTGATCTGATGAGGTGTGTCGACCTGTACAATCAGTGCCAGTCCAAGTGGTTTGAGGAGATGGTGACCAGCAGTctggagCTGGAGCGTCTGGAGATGGAGCGAGTGGAGATGATCAGACAGCATCTGTGTCAATATACAACACTACGACACGAAACAGACATGTTCAACCAAAGCACAATAGAGCCGGTGGACAAACTGCTGCGCTGCGTGGATCCGGCCAGAGACAGAGAATTATGGGTAAAAGAACACAAGACTGGCGAGGTCAGACCAGTGGACATGGAGATctga
>TCONS_00010713
taactcaacaactatagtaattgctCTGCTGtgatgattctatagttgctacgataacacaacagctatagaaATTCatctgtggtgattctacagttgctatggtaacacaacaactatagtaattaattaaataatttttttgtggtAATTCTATCGTAATTAATTTGCTGTGGTAATTACAAAGATGCCATGGTAAGGCAACTATAGAacttgatctgttgtggtgattctacagttgctatggtaacacatcaatattaatataaacaaatgactcaaTACTGTCATTTCTGTGATTGTTTTACAACTTCTGATTCATTTGTCAATGGGGAAATAATGAGGAATCGTAAACAGCagtaaacagtcaaactactcaCAAACAACTGTGTTTATGACTGTGCATGGAAATGAAAATCTATAATAGAATATCAGACTGCAGCATCAATCAGCATAACAGCTCATTTTACAGCTGAAAATAAGGTTCCAATGAGCGTGCGTAATCTTACATGAAAGAATAATGTCAACAGGATATATTACATGGGGatacattactatagtaaaaGCTAGAGTATACTACAGTGTTTATTATAGCTTATCACgtcactatagttaatactactacagtatgctggagcattcattacCAGTGTTGTAAATGTTATAACATATACTTTACTATGGTATAGTTCAGAAACACtgcagtatttactgtaaatgactATAGAATGAGGGATAAGAGTTTACAGTGGAGCAGGCTGTAATGTCAGTCCCAGATGAATGCTGCTGTTTGGCTCCCTCTAGTGTTACACTGTggttattaaatgttaataaagagcagaagttacacacacacacacttacactgctGAACAACATGCGTGTAAAAACCAGTGCAGAACAAAACATATCAGTGCAGTAAAATCACTGATGCGGGAACTACATCGCCTTGaaaagcttgtgtgtgtgtgtctgcaggtgaTGATCTGATGAGGTGTGTCGACCTGTACAATCAGTGCCAGTCCAAGTGGTTTGAGGAGATGGTGACCAGCAGTctggagCTGGAGCGTCTGGAGATGGAGCGAGTGGAGATGATCAGACAGCATCTGTGTCAATATACAACACTACGACACGAAACAGACATGTTCAACCAAAGCACAATAGAGCCGGTGGACAAACTGCTGCGCTGCGTGGATCCGGCCAGAGACAGAGAATTATGGGTAAAAGAACACAAGACTGGCGAGGTCAGACCAGTGGACATGGAGATctgagacacacaaacacaaactaaacCAATGCACATGTCAAGACTGAGGAACTAACGACACGACGCACCAACTGAACTTCCACTGAGAGGAAATGAAGAGACTGTGCGGATATCAGAGGATTAAAGCCATGCACTGATCTGAAAACAGTGTTCAACAGGACGTCACTCATCTGAAAAACAGTACTAATGTAGAAATGCTGCTCTTACATTCAAATAGTGCAACCTCTTTCAATTCTGCAATGCCAAAATGCCTTTCCCACATAGAGGTTTTGTGTTGCAGCTGAAATGTCTAATTCCTAAATGTATttatcaattattcatttatagtaaatatgctAATCTGTCGTTGAACCATGCTGTAGTAACGTCTATTATACTCTACATATAAACATCTATGTCAATGAATGCTACAGCCTACTGAAATTATTAACTAGAGTGAACTGGTAAATTGTagaaaatactgtagtatacttgtAGGATacacagtaaactgtggtgtattcatattgcaacacCCAATAGTTGCAGAAAATCGatagaatcaccacgacagatcaattactacagttgttgtgttaccatagcaactgtagaatcaccacaacagaacgATTACTGtagctgttaccatagcaactgtagaatcaccacaacagatcaattactatagaagttgttaccatagcaactgtagaatcttGAGAATAGTTCAAAAACACTAGAGTATTTTCTATAaatttgtacagtattttttcttACAAAGAGGTTTTgtgttgaaatatttaaaaatgcaaggtGTTTTCTTCTTATCAagcattgaatattttttttaagtagaaaTGAGCAAAATAATCGAGAGTTTCTAGcttgaaaataatattatttggCTCACCTCactgcttgttttaagaaatcttcttattattattttttctcctATCTAGAAAGTGCTCtgttagacatttggactagaaacaagacaacaccTCATATGTGAAAGGCATTTTGTTTGCAGTGTGTACTAATCAATGCATCACTTTCCATAACGCTGATATGAATTGAATATTTACCCAACATAACATGTTGGACATGTTGGACTCTTTGGACATTACAAAGAGTGCAGTTTCTCAGCGAGATGGACatggaaaataaaattaatcatatttGTCCTGCTGTCCTTTGGACTGGATATGAGAAAATCAGATGAAGATAACAATATACATCATATTGTCAAATATTTTCAGAACTATTAATAGTTCATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATTTTCAGAACTATTaatagttcatatatatatatatatatattgatcacATGGGATTTTTCTCACCATATTTAAAACTTTCTGAATAAATGTTTGATAAAGAATGtagaaatatgaaataaacattAATGTGATATAATTATGATTacataaaatattgctaaataaaaagcTGAATGTAAACACTGTATTATCTCTGCATTCAGTAATTCCGTCTGCAGATTTTGCTCTAATGATGGActaatattactgtaaacagtgtactTTGCAAGGCCATAAAATTAACTATGTATGAAATAATACTATTTGttgtcatattgcacagctcTAATATCAATAGTTTAATTAAAGAGCAATAATGTTGCTGGTAATGTTTGCAAAATATGAGCAAATCCTAAACATATCTATATTTATTAGTCCAGAAACAGAAATGATCTGTTGATTCACAATACCGTGATGGACTCAGGCTTTACATCACTCTCATACCCAAAAAGACAAATATACACAGGCACATGTGAAGACGCTTTACTTTACTTTGGTTTTCTGTCAGGATGTTTGAATGCATAAATATACAGACGTCTCCAACTGTCATTAATACTGTTTCCCTCTACTGTAGAACGAGATGTATATAGTGATGGAGCTACAGATAATATATTGAATGATTCTGCATAATGCTTATTTTTATACCCAATCAATTAACAGCTTTTCTAAAATGACTGTCGAGATGTTCCAGCTGGATTGACTATGTTTCTGAAGATGCACTAATAAAAGCATGCCTGTGAATTACCCATGGATATCACACTGTTTGATGTCTATACTg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116210

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008885 False 384 mRNA 0.50 5 197424 200452
TCONS_00010713 True 3459 lncRNA 0.34 3 198616 202640

Neighbor

gene id symbol gene type direction distance location
XLOC_004419 NA coding upstream 129644 65644 ~ 67780 (+)
XLOC_004418 mrpl58 coding upstream 147504 47439 ~ 49920 (+)
XLOC_004421 NA coding downstream 77501 280141 ~ 281265 (+)
XLOC_004422 NA coding downstream 84793 287433 ~ 288561 (+)
XLOC_004423 CABZ01058222.1 coding downstream 89812 292452 ~ 330202 (+)
XLOC_004424 rcvrnb coding downstream 113598 316238 ~ 319392 (+)
XLOC_004425 gsg1l2b coding downstream 185210 387850 ~ 408076 (+)
XLOC_004426 CT737227.1 non-coding downstream 207398 410038 ~ 459295 (+)
XLOC_004429 NA non-coding downstream 340069 542709 ~ 543010 (+)
XLOC_004433 NA non-coding downstream 689538 892178 ~ 895643 (+)

Expression


Co-expression Network