XLOC_004426 (CT737227.1)


Basic Information

Item Value
gene id XLOC_004426
gene name CT737227.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 410038 ~ 459295 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008890
aaaaggttgtTCCGTTTATTACTGTGACCAAACAGTCTATTTACAAATCACGGAGACTATTTGCGCATTTTATTAGCATTAAgcaacattaataattaatttaataatgtaactAGAGtgcttatttattacatttttaattaaaacacgttttatatacatatattaataaatcaaagaGTCGCAATTTTATCGTTAACAATGTATGCCCTTTTTCAGACACTAGCCAATCATGATGTAGCTCCTAAACTTAAATCTCATTGGACAGTGGAAGTGGCGCGGTAAATTGGCGGGCTTGTTTGTTTGTGAGTAGTTTGAGAGCTACGCAAATGCTCTATATATTCTCCAGTGACTTTTTTAAGCGTAAGAGGGAATCGCTAACAGAAACACGACGAATGTCTGTACACACACGCTTCAGTGAAGATCTGATTTTGCTCAATTTACAGTAGAATTTCGTCATTTTACTCTTTTGGATGTGGATGAAAACACTCTGAGACCATGACGCACCGGAAGTGCTATTAAAGcTGTTCGGCCATGGCTCCGTCCCTCACGCCGGCCGACACCACAGAGAAGAAGCATCCGGGCATCAGAGCGCGGATGTAGAGGGCCACGGTGGGCACGGGGTGGGCCAGAAACACCTCTCGGCTCTGTCTGTTCACCGAACGCACGATCTCCTGCGCCAGGATCTGCGGACTCACCCCGTGTGTGTTCAGCTTACTGCAGACGTCTGAAACAACAGCTCAGGTCAGGAGACACACGCAGCACTACCAATGAACACTTCACTAGTCAAGGTGTGTGCGTGGTCCTCAGTGACTCACAGGCCCAAATTGGGTTGGTGGGTGTGGCTTTAGTGGGTGTGGCAGTTATGGGAGTGGCTTCAGTGGGCGTGGCGTTCTCAGCTCCAGCATTGATGAAGGTGTGGCTGATGGTGCTGACGGAGATGCCGAACTCCTCCACCTCCGCCCGCAGACAGTCAAAAAACGCCTGCACTGCATGCTTGGACGCCGCGTCTGAAAACACAACCAGCAGTGCTCAGTCTACTACAACACATGCTCTATTTACTTAACCCCTGTGTGTGGTTAGATTGGCTCTCCTTTGgtgatgttggtgctgtttttaCCACATTGACTTCCATCATA
>TCONS_00010859
GCGGGCTTGTTTGTTTGTGAGTAGTTTGAGAGCTACGCAAATGCTCTATATATTCTCCAGTGACTTTTTTAAGCGTAAGAGGGAATCGCTAACAGAAACACGACGAATGTCTGTACACACACGCTTCAGTGAAGATCTGATTTTGCTCAATTTACAGTAGAATTTCGTCATTTTACTCTTTTGGATGTGGATGAAAACACTCTGAGACCATGACGCACCGGAAGTGCTATTAAAGcTGTTCGGCCATGGCTCCGTCCCTCACGCCGGCCGACACCACAGAGAAGAAGCATCCGGGCATCAGAGCGCGGATGTAGAGGGCCACGGTGGGCACGGGGTGGGCCAGAAACACCTCTCGGCTCTGTCTGTTCACCGAACGCACGATCTCCTGCGCCAGGATCTGCGGACTCACCCCGTGTGTGTTCAGCTTACTGCAGACGTCTGAAACAACAGCTCAGATGTTTGGTAAATGAAGACTCTTACAGCAGGTTCTGAACGGAAGAGCCAGTTTCCCCTGGATGCTGTTGACCAGCACAAACTGACCGGTGCGTCTGGTGATCATCAGCGGCAGGACGCCTcTGTGATCTACCTTTGGCCAGTGTGATCGGCCCGAAGTAATTGACGTCCATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096727

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008890 False 1139 lncRNA 0.46 2 410038 456515
TCONS_00010859 True 628 lncRNA 0.51 4 410327 459295

Neighbor

gene id symbol gene type direction distance location
XLOC_004425 gsg1l2b coding upstream 1962 387850 ~ 408076 (+)
XLOC_004423 CABZ01058222.1 coding upstream 79836 292452 ~ 330202 (+)
XLOC_004424 rcvrnb coding upstream 90646 316238 ~ 319392 (+)
XLOC_004422 NA coding upstream 121477 287433 ~ 288561 (+)
XLOC_004421 NA coding upstream 128773 280141 ~ 281265 (+)
XLOC_004427 mprip coding downstream 6406 465701 ~ 528026 (+)
XLOC_004428 si:dkey-94l16.4 coding downstream 72724 532019 ~ 540211 (+)
XLOC_004429 NA coding downstream 83414 542709 ~ 543010 (+)
XLOC_004430 si:ch211-176g6.1 coding downstream 179140 638435 ~ 639945 (+)
XLOC_004431 abcc3 coding downstream 236324 695619 ~ 786808 (+)
XLOC_004419 NA non-coding upstream 342258 65644 ~ 67780 (+)
XLOC_004433 NA non-coding downstream 432883 892178 ~ 895643 (+)
XLOC_004434 NA non-coding downstream 443293 902588 ~ 903652 (+)
XLOC_004436 NA non-coding downstream 615108 1074403 ~ 1078180 (+)
XLOC_004444 NA non-coding downstream 1507378 1966673 ~ 2004160 (+)

Expression


Co-expression Network