XLOC_004434


Basic Information

Item Value
gene id XLOC_004434
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 902588 ~ 903652 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010862
aaatgtttttaaaaaattaataactgcttttattttagctgaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtgaaaatttccttgctctgttaaaaataatttgggaaatataaaaaaaaaataaaataaaatcaaaagggagctaataattctgacttcaactgtaccctGAGAATCGATTCTGAACATTTGGGAATCCAGAATGGTTAGAGAATGAATGACTATGCAGCAGTTTTCCTCCCTTCTCATTAAGCCCCTACTGAGTAGTGTTCAGCAGTGTGATCATTAGTGAGACGGACCCATCCTGAAGTCGATGTATCCCTCTCCTCCGCTCATCACCAGCACAGATTTGACCAGTTCTGGTGTCGGAGACTCTGAGGATTTATCAGCAATCGCCTCCACTCCTGATCCTGATGCAGACGGAATCACCTGACCTGGCACTGCGGTGAAGAACTTGACGGCGTCTCGGTGTCCGTGAAAGCACAGCTGAGCGTGAGCCATGGAGCAGAAAGGCACAAACGTTCCTGTCGTGACTTTATCGCCGCTCTCGTCTCCGTACACACGGATTGCAGTGCCGGGTTGTTTGGACGATGCTGCTGTATCTTTACTCTCTGTTGccggaataaaaaaaaatgacatcagACTTATTAGCAGAGCTGGTGGATTACTTACAAAATGTGACACGATTACAAATTACTGGTAGTAAtcggactacttttggattacatttagattacttgtgTTCATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010862 True 772 lncRNA 0.41 2 902588 903652

Neighbor

gene id symbol gene type direction distance location
XLOC_004433 NA coding upstream 6945 892178 ~ 895643 (+)
XLOC_004432 wfikkn2b coding upstream 94145 804314 ~ 808443 (+)
XLOC_004431 abcc3 coding upstream 115780 695619 ~ 786808 (+)
XLOC_004430 si:ch211-176g6.1 coding upstream 262643 638435 ~ 639945 (+)
XLOC_004429 NA coding upstream 359578 542709 ~ 543010 (+)
XLOC_004435 si:ch1073-272o11.3 coding downstream 96671 1000323 ~ 1010416 (+)
XLOC_004436 NA coding downstream 170751 1074403 ~ 1078180 (+)
XLOC_004437 lmf1 coding downstream 183611 1087263 ~ 1132683 (+)
XLOC_004438 RAB26 coding downstream 236038 1139690 ~ 1241565 (+)
XLOC_004439 pemt coding downstream 382990 1286642 ~ 1388444 (+)
XLOC_004426 CT737227.1 non-coding upstream 443293 410038 ~ 459295 (+)
XLOC_004422 NA non-coding upstream 614027 287433 ~ 288561 (+)
XLOC_004421 NA non-coding upstream 621323 280141 ~ 281265 (+)
XLOC_004444 NA non-coding downstream 1063021 1966673 ~ 2004160 (+)
XLOC_004450 NA non-coding downstream 1674368 2578020 ~ 2607032 (+)
XLOC_004456 NA non-coding downstream 1865913 2769565 ~ 2772390 (+)
XLOC_004469 NA non-coding downstream 3082427 3986079 ~ 3991423 (+)

Expression


Co-expression Network