XLOC_000444


Basic Information

Item Value
gene id XLOC_000444
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 38343320 ~ 38346108 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003094
ttgtttttGGattttcaaacttttattttaatgatatacAATCTATAAGTGCGTTAGTCCAGTGTTATCATTCTGAAACCTAtattaaacaaatctttttttactgtttaattaCAGTTAAGAACATTTGTTCAAAGAGAATTTTATTTGCTGGATAATTACCTAATGAATGCAGAGCATTAAAAGAAAAGAAGACAAAAAGAACCAGGGAAAGATGAGCTGTAATCTGATATTAGATTTACAGTTAATTCAGCACTGGATAACATCAGAATTATTTAGGCTTCGTTGGTATGACACTTCACAAATAAAAGGATGTAGCAGTTTGCTGAGCGCTCATAACattgtaaatatgcaaaaaaaagtgcaaaagagAATTCACTCTTTTAAGTCTTATAGTCTTAAAATACTCCAAAATAAAATTTCATGTTTATAAATCTCTATACTTAAATATGTACattatgtgcaaataaaatggtCAATATTACATTAAACTATATGCAGCCCGTGCGAATAATAATGTTTTCCTTATAGTTGTGTATGTTTAGTAATTGTTCCTCATTATTGGCACCCAATTGAAAGTCTAAATAAAAGAAAAGCCTGAAATGCATGAAAAATACCCACATCAATGAActgaaagaaaataattaacttaaaCAGTAGCTGTCAAAtgtattattagaaaaaaaatcattgtatatCAAGTGTctttatactttatataaagCTAAGGGAAAAATGAAGAGATCACCTAAAATCTCAGTCACGTCtcagtaaaatgtaaatttggTTTATTCTATAAGCAACTGATgatatttcttccaaatttaaaataaacattgtcattttttgttgaattaaataaaaaaaataataattaaacaaatctgAAGAGTAAATAAAGCAGCATTCTGTGGAATAAGCCTGACTTTttatcacaacaaatgaaaacatttgttattctgtcTTTTTTCTTTGAGAAACAAATATCCTAAATGacaatattgttttatttgaaatgaGACTTATTCTATAAGCTACTGGtggcatttcttccaaatttaaaatattgtcattttgtgatgcagtaaataaataaaataactttttcaataattcagAAAAGTAAAGAAAGCAATATTTTGTGGAATAACCATGATTTTCAGTCACAACACATTAAATCATTTGTTATTCTGttgttttcaaaaaataaaaataaatgacaattcttttattttaaatttgctagaaatcagaccttaatagaataaaacaattttattcaAATCCATACCTAATAGATTCTCtgaaactccaaaaaaaaaaaaaaaaaaaagagaaaaaaaagagaccaaaacaaagaaagATAGATAATAAAAAATTCAGTGCATACAATGTCTGGTGGGTTTTACTCTTCTAAAAGAAGACGAGACATAAGTGACGATGCACAAACACAAA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003094 True 1455 lncRNA 0.26 2 38343320 38346108

Neighbor

gene id symbol gene type direction distance location
XLOC_000442 NA coding upstream 19285 38171857 ~ 38324035 (+)
XLOC_000443 NA coding upstream 156126 38183799 ~ 38187194 (+)
XLOC_000441 galnt7 coding upstream 172414 38142354 ~ 38170906 (+)
XLOC_000438 GALNTL6 coding upstream 210708 37752171 ~ 38132612 (+)
XLOC_000440 CT583668.1 coding upstream 346743 37996459 ~ 37996577 (+)
XLOC_000445 cep44 coding downstream 16240 38362348 ~ 38374799 (+)
XLOC_000446 BX649481.1 coding downstream 319646 38665754 ~ 38753029 (+)
XLOC_000447 wdr17 coding downstream 412153 38758261 ~ 38803495 (+)
XLOC_000448 spcs3 coding downstream 472160 38818268 ~ 38822167 (+)
XLOC_000449 NA coding downstream 503521 38849629 ~ 39022832 (+)
XLOC_000439 NA non-coding upstream 508928 37833347 ~ 37834392 (+)
XLOC_000436 NA non-coding upstream 704953 37591258 ~ 37638367 (+)
XLOC_000451 NA non-coding downstream 687032 39033140 ~ 39033591 (+)
XLOC_000452 NA non-coding downstream 714329 39060437 ~ 39200709 (+)
XLOC_000454 BX322797.1 non-coding downstream 1167633 39513741 ~ 39513857 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G212871 NA non-coding NC_035921.1 CM008324.1 254024 ~ 257592 (+)