XLOC_004456


Basic Information

Item Value
gene id XLOC_004456
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2769565 ~ 2772390 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010865
TTGAGACTTTAGATTAATTTAGGCCTAAAATTTCGATTTTAAGATTTCAGCCTGTATTTAAGATACAGCATGTACACAAATATGCATCATGTAAATACAAGCTTTTATCGTGGATGCGAtaatcattcaattattcattcagagccgatgctcttccagctgcaacccagtactgggaaacagtactacatacacactcatacactatggtcaatttagttaatcaattctctATGGGAGTAACCGGaacacctagaggaaacccacgccaactcggggagaacatgcaaactccacacagaaatgccaactggtccagctgggattcgacgcagcaaccttcttgctgtgaggtgacagtgctaaccactgagccaccacgctGCCCAACTGACAATTACAATACACAAATTCAATCTCAGCCATGATGTCttgtctcaatttttttttttatcagttcagACTTTTTAATctcaaatttaaaatgacatctcaTAACATGTTTCAAGATTCATGTGAAGGAAATGGCCTTCCATATACAGTCTGTGATTTGAAAAGCTAATCGTCTAAAGAAAAGTCTCTtgaaagtgtccaaacacagacagctgaaaacaATCCGCATGTATGGCTTCTATAGCAGCTTCCTCAGTCGAATCCGGAAACTTCAAGTCTTGAGACGAAACTGAATCCATATTTTACATACAACACTTACATTCAAACAAAGATAACAAACAGTATATCAAGAAAAACACCTGAACTGAAACAGTAAGAATGCAGAATTACAGTCTCAAACCTTTTGATTTGATTGAGAAACAAAATGATTGCAGAAATAATAACAGCAAAAGTTCCTCATTCCGGTCTTAAAACATTGTGATGATCAGCATTTtgcgaaatgtaaaatatgttgctccGCATACATCTCATTGCACGTTTCGGATGACAAATCCAGTGGAGGGCGCTCTCTTCATCTTTGCAAATTTAAAATACGTTACtcagggtacgttttgttgcatgtttcagatgacaaatccactagagggcgccctttttatttttgttaatctgAAATGCAGTACTTAGGAtacgttttgttgcacatttcagatgacaaatgtCAATCAAACATAAAATGCACTagctaatctaaaaaaaaacactaggtGGTGCTCTGtatatttttgtgaatctgaaatgcgttacttaTGGTACATTTTGTTTAAGTaccagatgacaaatccactagagagcaCTCTCTTTATATTTGTGAATCTGAAAGTCGTAACTTTTGGTACATTATTTGTACATTTCAGATTTAAAACCATCTACTAAAGGGTGCTGTAAACATTTTTGccaatctgaaatacgttacttttGGTGCCTTTtgctgcacatttcagatgacagatCCACATGAGGATGCTCTCTTCATTTTTGTCAATCTAACATACGTAAGTTTTGgtatattatttgtaaatttcAGATAAAAATTCTACTAGATGGTGCTGTTaattttttgtgaatctgaaatacgttatttttggtacattttttgtatattttagatgaaaaatccataagagggcgctgtttacatttttgcgaatctgaaatacgttacttaggccatattttgttgtacgtttcagaaaCCCATCCGTGTATATATACACCAGAAGGGCTtgtcat
>TCONS_00010866
CTAAAATTTCGATTTTAAGATTTCAGCCTGTATTTAAGATACAGCATGTACACAAATATGCATCATGTAAATACAAGCTTTTATCGTGGATGCGAtaatcattcaattattcattcagagccgatgctcttccagctgcaacccagtactgggaaacagtactacatacacactcatacactatggtcaatttagttaatcaattctctATGGGAGTAACCGGaacacctagaggaaacccacgccaactcggggagaacatgcaaactccacacagaaatgccaactggtccagctgggattcgacgcagcaaccttcttgctgtgaggtgacagtgctaaccactgagccaccacgctGCCCAACTGACAATTACAATACACAAATTCAATCTCAGCCATGATGTCttgtctcaatttttttttttatcagttcagACTTTTTAATctcaaatttaaaatgacatctcaTAACATGTTTCAAGATTCATGTGAAGGAAATGGCCTTCCATATACAGTCTGTGATTTGAAAAGCTAATCGTCTAAAGAAAAGTCTCTtgaaagtgtccaaacacagacagctgaaaacaATCCGCATGTATGGCTTCTATAGCAGCTTCCTCAGTCGAATCCGGAAACTTCAAGTCTTGAGACGAAACTGAATCCATATTTTACATACAACACTTACATTCAAACAAAGATAACAAACAGTATATCAAGAAAAACACCTGAACTGAAACAGTAAGAATGCAGAATTACAGTCTCAAACCTTTTGATTTGATTGAGAAACAAAATGATTGCAGAAATAATAACAGCAAAAGTTCCTCATTCCGGTCTTAAAACATTGTGATGATCAGCATTTtgcgaaatgtaaaatatgttgctccGCATACATCTCATTGCACGTTTCGGATGACAAATCCAGTGGAGGGCGCTCTCTTCATCTTTGCAAATTTAAAATACGTTACtcagggtacgttttgttgcatgtttcagatgacaaatccactagagggcgccctttttatttttgttaatctgAAATGCAGTACTTAGGAtacgttttgttgcacatttcagatgacaaatgtCAATCAAACATAAAATGCACTAGGTAATCTAAAAAAACACTAGGTGGTGCTCTGtatatttttgtgaatctgaaatgcgttacttaTGGTACCTTTTGTTTACATaccagatgacaaatccactagagagcaCTCTCTTCatatttgtgaatctgaaattcGTAACTTTTGGTTCATTATTTGTAcgtttcagatttaaaaaaaccTACTACTAAAcattttttgcgaatctgaaatacgttacttttGGTGCCTTTtcttgcacatttcagatgacaaatccacttaaGGATGCTCTCTTCATTATTGTCAAGCTAACATACGTAAGTTTTggtatattatttgtatttttcagataaaaattccactagagggtgctgtgtgGATTTTTGCAAATCTGTAATATGTTACTTTtagtacattttgttgcatgtttcagatgacaaatccactagagggcgccctttttatttttgtgaatctgaaatgcaGTACATTTAGttgtgtttcagatgacaaacccactagagggcgccctttttatttttgtgaatctgaaatgcaGTACTTAGGAtacgttttgttgcacatttcaaatgacaaatctgAAATGTCAATCAAACATAAAATGCACTAGGTAATCTAAAAAAACACTAGGTGGTGCTCTGtatatttttgtgaatctgaaatgcgttacttaTGGTACATTTTGTTTACGTaccagatgacaaatccactacagAGCACTCTCTTTATATTTGTGAATCTGGAAGTTGTAACTTTTGGTACATTATTTGTACATTTCAGATTTAAAACCATCTACTAAAGGGTGCTGTAAACATTTTTGccaatctgaaatacgttacttttGGTGCCTTTtgctgcacatttcagatgacagatCCACATGAGGATGCTCTCTTCATTTTTGTCAATCTAACATACGTAAGTTTTGgtatattatttgtaaatttcAGATAAAAATTCTACTAGATGGTGCTGTTaattttttgtgaatctgaaatacgttatttttggtacattttttgtatattttagatgaaaaatccataagagggcgctgtttacatttttgcgaatctgaaatacgttacttaggccatattttgttgtacgtttcagaaaCCCATCCGTGTATATATACACCAGAAGGGCTtgtcat
>TCONS_00010867
AAAATTTCGATTTTAAGATTTCAGCCTGTATTTAAGATACAGCATGTACACAAATATGCATCATGTAAATACAAGCTTTTATCGTGGATGCGAtaatcattcaattattcattcagagccgatgctcttccagctgcaacccagtactgggaaacagtactacatacacactcatacactatggtcaatttagttaatcaattctctATGGGAGTAACCGGaacacctagaggaaacccacgccaactcggggagaacatgcaaactccacacagaaatgccaactggtccagctgggattcgacgcagcaaccttcttgctgtgaggtgacagtgctaaccactgagccaccacgctGCCCAACTGACAATTACAATACACAAATTCAATCTCAGCCATGATGTCttgtctcaatttttttttttatcagttcagACTTTTTAATctcaaatttaaaatgacatctcaTAACATGTTTCAAGATTCATGTGAAGGAAATGGCCTTCCATATACAGTCTGTGATTTGAAAAGCTAATCGTCTAAAGAAAAGTCTCTtgaaagtgtccaaacacagacagctgaaaacaATCCGCATGTATGGCTTCTATAGCAGCTTCCTCAGTCGAATCCGGAAACTTCAAGTCTTGAGACGAAACTGAATCCATATTTTACATACAACACTTACATTCAAACAAAGATAACAAACAGTATATCAAGAAAAACACCTGAACTGAAACAGTAAGAATGCAGAATTACAGTCTCAAACCTTTTGATTTGATTGAGAAACAAAATGATTGCAGAAATAATAACAGCAAAAGTTCCTCATTCCGGTCTTAAAACATTGTGATGATCAGCATTTtgcgaaatgtaaaatatgttgctccGCATACATCTCATTGCACGTTTCGGATGACAAATCCAGTGGAGGGCGCTCTCTTCATCTTTGCAAATTTAAAATACGTTACtcagggtacgttttgttgcatgtttcagatgacaaatccactagagggcgccctttttatttttgttaatctgAAATGCAGTACTTAGGAtacgttttgttgcacatttcagatgacaaatgtCAATCAAACATAAAATGCACTAGctaatctaaaaaaaaacactaggtGGTGCTCTGtatatttttgtgaatctgaaatgcgttacttaTGGTACATTTTGTTTAAGTaccagatgacaaatccactagagagcaCTCTCTTTATATTTGTGAATCTGAAAGTCGTAACTTTTGGTACATTATTTGTACATTTCAGATTTAAAACCATCTACTAAAGGGTGCTGTAAACATTTTTGccaatctgaaatacgttacttttGGTGCCTTTtgctgcacatttcagatgacagatCCACATGAGGATGCTCTCTTCATTTTTGTCAATCTAACATACGTAAGTTTTGgtatattatttgtaaatttcAGATAAAAATTCTACTAGATGGTGCTGTTaattttttgtgaatctgaaatacgttatttttggtacattttttgtatattttagatgaaaaatccataagagggcgctgtttacatttttgcgaatctgaaatacgttacttaggccatattttgttgtacgtttcagaaaCCCATCCGTGTATATATACACCAGAAGGGCTtgtcat
>TCONS_00010868
ATTTTAAGATTTCAGCCTGTATTTAAGATACAGCATGTACACAAATATGCATCATGTAAATACAAGCTTTTATCGTGGATGCGAtaatcattcaattattcattcagagccgatgctcttccagctgcaacccagtactgggaaacagtactacatacacactcatacactatggtcaatttagttaatcaattctctATGGGAGTAACCGGaacacctagaggaaacccacgccaactcggggagaacatgcaaactccacacagaaatgccaactggtccagctgggattcgacgcagcaaccttcttgctgtgaggtgacagtgctaaccactgagccaccacgctGCCCAACTGACAATTACAATACACAAATTCAATCTCAGCCATGATGTCttgtctcaatttttttttttatcagttcagACTTTTTAATctcaaatttaaaatgacatctcaTAACATGTTTCAAGATTCATGTGAAGGAAATGGCCTTCCATATACAGTCTGTGATTTGAAAAGCTAATCGTCTAAAGAAAAGTCTCTtgaaagtgtccaaacacagacagctgaaaacaATCCGCATGTATGGCTTCTATAGCAGCTTCCTCAGTCGAATCCGGAAACTTCAAGTCTTGAGACGAAACTGAATCCATATTTTACATACAACACTTACATTCAAACAAAGATAACAAACAGTATATCAAGAAAAACACCTGAACTGAAACAGTAAGAATGCAGAATTACAGTCTCAAACCTTTTGATTTGATTGAGAAACAAAATGATTGCAGAAATAATAACAGCAAAAGTTCCTCATTCCGGTCTTAAAACATTGTGATGATCAGCATTTtgcgaaatgtaaaatatgttgctccGCATACATCTCATTGCACGTTTCGGATGACAAATCCAGTGGAGGGCGCTCTCTTCATCTTTGCAAATTTAAAATACGTTACtcagggtacgttttgttgcatgtttcagatgacaaatccactagagggcgccctttttatttttgttaatctgAAATGCAGTACTTAGGAtacgttttgttgcacatttcagatgacaaatgtCAATCAAACATAAAATGCACTAGGTAATCTAAAAAAACACTAGGTGGTGCTCTGtatatttttgtgaatctgaaatgcgttacttaTGGTACCTTTTGTTTACATaccagatgacaaatccactagagagcaCTCTCTTCatatttgtgaatctgaaattcGTAACTTTTGGTTCATTATTTGTAcgtttcagatttaaaaaaaccTACTACTAAAcattttttgcgaatctgaaatacgttacttttGGTGCCTTTtcttgcacatttcagatgacaaatccacttaaGGATGCTCTCTTCATTATTGTCAAGCTAACATACGTAAGTTTTggtatattatttgtatttttcagataaaaattccactagagggtgctgtgtgGATTTTTGCAAATCTGTAATATGTTACTTTtagtacattttgttgcatgtttcagatgacaaatccactagagggcgccctttttatttttgttaatctgAAATGCAGTACTGAGgatacattttgttgcacatgtCAGATGACAAATCTGAATTGTTAATCAAACATAAAATGCACTagctaatctaaaaaaaaacactaggtGGTGCTCTGtatatttttgtgaatctgaaatgcgttacttaTGGTACATTTTGTTTAAGTaccagatgacaaatccactagagagcaCTCTCTTTATATTTGTGAATCTGAAAGTCGTAACTTTTGGTACATTATTTGTACATTTCAGATTTAAAACCATCTACTAAAGGGTGCTGTAAACATTTTTGccaatctgaaatacgttacttttGGTGCCTTTtgctgcacatttcagatgacagatCCACATGAGGATGCTCTCTTCATTTTTGTCAATCTAACATACGTAAGTTTTGgtatattatttgtaaatttcAGATAAAAATTCTACTAGATGGTGCTGTTaattttttgtgaatctgaaatacgttatttttggtacattttttgtatattttagatgaaaaatccataagagggcgctgtttacatttttgcgaatctgaaatacgttacttaggccatattttgttgtacgtttcagaaaCCCATCCGTGTATATATACACCAGAAGGGCTtgtcat
>TCONS_00010869
GATACAGCATGTACACAAATATGCATCATGTAAATACAAGCTTTTATCGTGGATGCGAtaatcattcaattattcattcagagccgatgctcttccagctgcaacccagtactgggaaacagtactacatacacactcatacactatggtcaatttagttaatcaattctctATGGGAGTAACCGGaacacctagaggaaacccacgccaactcggggagaacatgcaaactccacacagaaatgccaactggtccagctgggattcgacgcagcaaccttcttgctgtgaggtgacagtgctaaccactgagccaccacgctGCCCAACTGACAATTACAATACACAAATTCAATCTCAGCCATGATGTCttgtctcaatttttttttttatcagttcagACTTTTTAATctcaaatttaaaatgacatctcaTAACATGTTTCAAGATTCATGTGAAGGAAATGGCCTTCCATATACAGTCTGTGATTTGAAAAGCTAATCGTCTAAAGAAAAGTCTCTtgaaagtgtccaaacacagacagctgaaaacaATCCGCATGTATGGCTTCTATAGCAGCTTCCTCAGTCGAATCCGGAAACTTCAAGTCTTGAGACGAAACTGAATCCATATTTTACATACAACACTTACATTCAAACAAAGATAACAAACAGTATATCAAGAAAAACACCTGAACTGAAACAGTAAGAATGCAGAATTACAGTCTCAAACCTTTTGATTTGATTGAGAAACAAAATGATTGCAGAAATAATAACAGCAAAAGTTCCTCATTCCGGTCTTAAAACATTGTGATGATCAGCATTTtgcgaaatgtaaaatatgttgctccGCATACATCTCATTGCACGTTTCGGATGACAAATCCAGTGGAGGGCGCTCTCTTCATCTTTGCAAATTTAAAATACGTTACtcagggtacgttttgttgcatgtttcagatgacaaatccactagagggcgccctttttatttttgtgaatctgaaatgcaGTACATTTAGttgtgtttcagatgacaaacccactagagggcgccctttttatttttgtgaatctgaaatgcaGTACTTAGGAtacgttttgttgcacatttcaaatgacaaatctgAAATGTCAATCAAACATAAAATGCACTAGGTAATCTAAAAAAACACTAGGTGGTGCTCTGtatatttttgtgaatctgaaatgcgttacttaTGGTACATTTTGTTTACGTaccagatgacaaatccactacagAGCACTCTCTTTATATTTGTGAATCTGGAAGTTGTAACTTTTGGTACATTATTTGTACATTTCAGATTTAAAACCATCTACTAAAGGGTGCTGTAAACATTTTTGccaatctgaaatacgttacttttGGTGCCTTTtgctgcacatttcagatgacagatCCACATGAGGATGCTCTCTTCATTTTTGTCAATCTAACATACGTAAGTTTTGgtatattatttgtaaatttcAGATAAAAATTCTACTAGATGGTGCTGTTaattttttgtgaatctgaaatacgttatttttggtacattttttgtatattttagatgaaaaatccataagagggcgctgtttacatttttgcgaatctgaaatacgttacttaggccatattttgttgtacgtttcagaaaCCCATCCGTGTATATATACACCAGAAGGGCTtgtcat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010865 False 1686 lncRNA 0.36 3 2769565 2772390
TCONS_00010866 False 2274 lncRNA 0.35 2 2769589 2772390
TCONS_00010867 False 1660 lncRNA 0.36 3 2769591 2772390
TCONS_00010868 False 2192 lncRNA 0.35 2 2769600 2772390
TCONS_00010869 True 1703 lncRNA 0.37 2 2769626 2772390

Neighbor

gene id symbol gene type direction distance location
XLOC_004455 antxr1c coding upstream 24919 2676878 ~ 2744646 (+)
XLOC_004454 rbp3 coding upstream 99409 2665081 ~ 2670156 (+)
XLOC_004453 irbpl coding upstream 106094 2660733 ~ 2663471 (+)
XLOC_004452 gdf2 coding upstream 118289 2648043 ~ 2651276 (+)
XLOC_004451 gdf10b coding upstream 123925 2631711 ~ 2645640 (+)
XLOC_004457 mms19 coding downstream 32115 2804505 ~ 2848288 (+)
XLOC_004458 prkar1ab coding downstream 98281 2870671 ~ 2895802 (+)
XLOC_004459 lrrc45 coding downstream 221133 2993523 ~ 3019847 (+)
XLOC_004460 rac3b coding downstream 250492 3022882 ~ 3042029 (+)
XLOC_004461 sgca coding downstream 305831 3078221 ~ 3093024 (+)
XLOC_004450 NA non-coding upstream 162533 2578020 ~ 2607032 (+)
XLOC_004444 NA non-coding upstream 765405 1966673 ~ 2004160 (+)
XLOC_004436 NA non-coding upstream 1691385 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 1865913 902588 ~ 903652 (+)
XLOC_004433 NA non-coding upstream 1873922 892178 ~ 895643 (+)
XLOC_004469 NA non-coding downstream 1213689 3986079 ~ 3991423 (+)
XLOC_004471 NA non-coding downstream 1320062 4092452 ~ 4093573 (+)
XLOC_004472 NA non-coding downstream 1331398 4103788 ~ 4106410 (+)
XLOC_004478 NA non-coding downstream 1636269 4408659 ~ 4450452 (+)
XLOC_004479 NA non-coding downstream 1655733 4428123 ~ 4473148 (+)

Expression


Co-expression Network