XLOC_004461 (sgca)


Basic Information

Item Value
gene id XLOC_004461
gene name sgca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3078221 ~ 3093024 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008937
CCAAAACAAGATGGCAGACAAAAGGAGCTGGGCTTTAGCAATAACAGTCTGTGGAAACATATTTAAGGTTCACTGTtggtttgttgtgtttttaaGGAATACTTTTAACAAAATTCAATCTGAGAGAGTGATTCACTTGAGagaaaaaagaaatgttaaaaCTACTGTATatgctgctgtttttttattgaaacacaaaaggagatattttcaAGAATGTTCATGCAGCTCTTTcctatttaaagggatatttcacccaaaactaaaatcATTAACTCATCCTTGTCACAAGCTTTGAGTtgttttcctctgttgaacacaaaaggagatattttgaaaaatgttggaaa
>TCONS_00008938
AAAACAAGATGGCAGACAAAAGGAGCTGGGCTTTAGCAATAACAGTCTGTGTGGCTGGTTTTCTGTGGGTTCAGGCCGACAGCATCACAGAGACTCCCGCCGGTCAGATGTTTGTCTATGAGCTTCACAGAGAAATCTTCCAGAGTGAATTTGAGCCGCTTCATAAACTCTTTGGTCATATTTATAATGACCCCATGGTGTTTAAATGCAACAAGGAGCGATTTCCAGACCTGCCCCGGTGGCTCCGCTTCACCCAGAGAGACCCCTATGAAAACGGATTCCTGTACGGGACGCCACTGCCACAAGACCAGGGCAAGAACATCATAGAGATATTTGTGACCAACAAACGGAGTTATGACACGTTCAGAGAGAGGCTGGTGATAAACGTGGGTCCTCCAGTGAAGCAGTTCCCGTATCAGGCTGAGTTCTTCATTGAGCTGCGAGAGATTGAGAAAGTTCTGCCTGCTGTGGTTCAAGAGGAGATTAAACTCGACATTCAGCATCTGTGGGGAACCGGAAACCTGGAGTTCGTGAACATCACCTCTGCTCTGGACAGGGGTGGTCGCGTCCCCCTTCCCCTTCCCGGATATTTTGAGGGCGTATATGTGAAACTGGGTTCCGATCGGCCCTTCTCTAAGTGCATGCAGAGACTGCAGACGACGGCGCATCAGAGAGAGTGTGAATCTGGAGGGAAACTCACTGGAGACTGCAGCACCTGCACAAACCCTGCCAACTGCATCAGCTGGTGCAGATCTGAGCTGTTTGATCTGTCCAAGCCTGTTCCTCCAGCACCGGTCCCTAAGGTGGGTTCAGGTGTGCTGGAGTGGGGTGGAGAGTTCAGTCCTCCCGAATCTCCTCCTGACAGAGATTTCTTCCCGGACTACATCGTCACTGTCATCGTTCCCTTCGCTCTGGCTCTGATCCTCTGTGTCCTCCTGGCCTACATCATGTGTTGCAGGAGAGAGGGAGTTGTGAAGCGAAACGCCAAGACCACTGATCTCCAGTTGTATCATCACCACACTATCCAGGGTAACGCCAATGAGCTGCGGAGGATGGCCGGCAACGACAGACAGAATGTGGATCGCCCTCGGCAGTGTTTACAGCCTCTCCTGATGGCAGAGCAGCCCATGGCGGGACGCTGAACAACACAAGCTAGCTACCAACGCTTGAGGAACAGTCTGTGGAAACATATTTAAGGTTCACTGTtggtttgttgtgtttttaaGGAATACTTTTAACAAAATTCAATCTGAGAGAGTGATTCACTTGAGagaaaaaagaaatgttaaaaCTACTGTATatgctgctgtttttttattgaaacacaaaaggagatattttcaAGAATGTTCATGCAGCTCTTTcctatttaaagggatatttcacccaaaactaaaatcATTAACTCATCCTTGTCACAAGCTTTGAGTtgttttcctctgttgaacacaaaaggagatattttgaaaaatgttggaaaccggtaaccatagacttacatttattttccttcggctcagtcccatATACAACAGGAGTCGCCACAGAGgaaagaactgccaactatttatgcagcgggtgcccttccagttgcaacccagtactggaaaacacacatacactctcgaTATGGCcaatttttgttcattcattcgttttcttttcagcgtagtccctttattattctggggtcgccacagcagaatgaaccaccaatttatccagcatatgttttacgcagcaacccagctgcaaaccatcactggaaaacatccat

Function

symbol description
sgca Predicted to enable calcium ion binding activity. Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. Predicted to be part of sarcoglycan complex. Is expressed in several structures, including adaxial cell; alar plate midbrain region; brain; cardiovascular system; and musculature system. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2D and muscular dystrophy. Orthologous to human SGCA (sarcoglycan alpha).

GO:

id name namespace
GO:0016012 sarcoglycan complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko00052 Galactose metabolism
ko02060 Phosphotransferase system (PTS)
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko05416 Viral myocarditis
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041111-121 Predicted to enable calcium ion binding activity. Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. Predicted to be part of sarcoglycan complex. Is expressed in several structures, including adaxial cell; alar plate midbrain region; brain; cardiovascular system; and musculature system. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2D and muscular dystrophy. Orthologous to human SGCA (sarcoglycan alpha).

Ensembl:

ensembl_id ENSDARG00000074156

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008937 False 350 mRNA 0.33 2 3078221 3092727
TCONS_00008938 True 1777 mRNA 0.48 9 3078223 3093024

Neighbor

gene id symbol gene type direction distance location
XLOC_004460 rac3b coding upstream 36192 3022882 ~ 3042029 (+)
XLOC_004459 lrrc45 coding upstream 58374 2993523 ~ 3019847 (+)
XLOC_004458 prkar1ab coding upstream 182419 2870671 ~ 2895802 (+)
XLOC_004457 mms19 coding upstream 229933 2804505 ~ 2848288 (+)
XLOC_004456 NA coding upstream 305831 2769565 ~ 2772390 (+)
XLOC_004462 tmem101 coding downstream 169540 3262564 ~ 3273072 (+)
XLOC_004463 g6pc3 coding downstream 208125 3301149 ~ 3310677 (+)
XLOC_004464 coa3a coding downstream 478746 3571770 ~ 3574657 (+)
XLOC_004465 pagr1 coding downstream 630626 3723650 ~ 3732014 (+)
XLOC_004466 cabp5a coding downstream 755085 3848109 ~ 3861759 (+)
XLOC_004450 NA non-coding upstream 471189 2578020 ~ 2607032 (+)
XLOC_004444 NA non-coding upstream 1074061 1966673 ~ 2004160 (+)
XLOC_004436 NA non-coding upstream 2000041 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 2174569 902588 ~ 903652 (+)
XLOC_004469 NA non-coding downstream 893055 3986079 ~ 3991423 (+)
XLOC_004471 NA non-coding downstream 999428 4092452 ~ 4093573 (+)
XLOC_004472 NA non-coding downstream 1010764 4103788 ~ 4106410 (+)
XLOC_004478 NA non-coding downstream 1315635 4408659 ~ 4450452 (+)
XLOC_004479 NA non-coding downstream 1335099 4428123 ~ 4473148 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04471595_04476690 SGCA coding CI01000047 null 4471125 ~ 4477217 (+)