XLOC_004464 (coa3a)


Basic Information

Item Value
gene id XLOC_004464
gene name coa3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3571770 ~ 3574657 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008941
CGCAAATGCGGCGCATCATTGACGTGCAAAATAGCCCTGCGTTACGTCAGACAGCAGCGCCTCAAACATGGCAGACAAGAGTAGTCAAGGGGAGCCCAAACCCGAAGCCCAGTTTGCCAAGAGAATTGACCCGACAAAAGAAGCCCTGACCAAAGAACAGCTGCAGTTCATCCGGCAGGTGGAAATGGCGCAGTGGAAGAAGAAAACAGACAAGCTCCGGGGCAGAAATGTGGCGACAGGACTCGCTATCGGCGCGGTGGTGCTCGGTATCTATGGCTACACATTCTACTCGGTATCCCAAGAAAAAATCATGGATGAAATAGATGAAGAAGCAAAAGTGCGTGTACCGAAGACTGGAGCAAACTGATGATGCTCAGGATTGTCCACACGGAGCGACTGACTGCACATCCGTTCAGTCTGAGACTCTTGCCAAGGATCGCTATTAAAAATGCAATGCAGTGTGTGGAGTATATTAGCGGAGACATGGAAACCGAATGCCATAATGATGAAGACTGCAGCGGTGTTTATACTACTGCTGATTTTACTGGAGTGCAAATACACGCATAATCAGAATGAGAGTAATTTAAACAATAGCCAtcctttgttttttctgtatatttgtcttttttttatgaaCACAATAAATGTGTGCTAtaagttaaatgtttagttttgcTTTGATCAGTTCCTCGCTCAACCGGTCCCCTCTTGGATTTTTCTGTTAAATGAAATCTGATTATTAAAATGACATTGTGGTGATTTTTGATGAATA

Function

symbol description
coa3a Predicted to be involved in mitochondrial cytochrome c oxidase assembly and positive regulation of mitochondrial translation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COA3 (cytochrome c oxidase assembly factor 3).

GO:

id name namespace
GO:0070131 positive regulation of mitochondrial translation biological_process
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-187 Predicted to be involved in mitochondrial cytochrome c oxidase assembly and positive regulation of mitochondrial translation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COA3 (cytochrome c oxidase assembly factor 3).

Ensembl:

ensembl_id ENSDARG00000100585

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008941 True 772 mRNA 0.44 2 3571770 3574657

Neighbor

gene id symbol gene type direction distance location
XLOC_004463 g6pc3 coding upstream 261093 3301149 ~ 3310677 (+)
XLOC_004462 tmem101 coding upstream 298698 3262564 ~ 3273072 (+)
XLOC_004461 sgca coding upstream 478746 3078221 ~ 3093024 (+)
XLOC_004460 rac3b coding upstream 529741 3022882 ~ 3042029 (+)
XLOC_004459 lrrc45 coding upstream 551923 2993523 ~ 3019847 (+)
XLOC_004465 pagr1 coding downstream 148993 3723650 ~ 3732014 (+)
XLOC_004466 cabp5a coding downstream 273452 3848109 ~ 3861759 (+)
XLOC_004467 nif3l1 coding downstream 296795 3871452 ~ 3909738 (+)
XLOC_004468 tbx6 coding downstream 337887 3912544 ~ 3923070 (+)
XLOC_004469 NA coding downstream 411422 3986079 ~ 3991423 (+)
XLOC_004456 NA non-coding upstream 799380 2769565 ~ 2772390 (+)
XLOC_004450 NA non-coding upstream 964738 2578020 ~ 2607032 (+)
XLOC_004444 NA non-coding upstream 1567610 1966673 ~ 2004160 (+)
XLOC_004436 NA non-coding upstream 2493590 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 2668118 902588 ~ 903652 (+)
XLOC_004471 NA non-coding downstream 517795 4092452 ~ 4093573 (+)
XLOC_004472 NA non-coding downstream 529131 4103788 ~ 4106410 (+)
XLOC_004478 NA non-coding downstream 834002 4408659 ~ 4450452 (+)
XLOC_004479 NA non-coding downstream 853466 4428123 ~ 4473148 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G203126 NA unknown CI01000047 null 4278908 ~ 4278976 (-)