XLOC_004465 (pagr1)


Basic Information

Item Value
gene id XLOC_004465
gene name pagr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3723650 ~ 3732014 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008942
GCGTCGCTGTGAGCGGATCCTCACGTACGGAAATGACGCCACTGACATCAAGGCGCCGAAATAAACAGTACTTTTTGGCCATGACAACAAAAATctgtattattttcataaataataaCCCACTGATGCGTTTAATCACCCCGCGCGGCTCCCTGTAACACTGATAGGAAGGTTTGACTCCGCCTCTTTATCGGAGATGCAGGAGGCGCAGGACACACTGGCGGAGCGCGTGGAGTCGCTGGGAGTCGGTGAACGGGACAAAACCGGAGAAAAGGAGGAGCAGAAGGAGAAAGACGGAGATGAGACCAGCACAGCCGCTACACACACTCCGACGGAGGACAACACTGCAGAAGGACAGAAGGAGTTGAGGGAGGAGCAGAAGGAGGGAACGAGCACAGATGGAGAAGTAAACGGTGGTGAAGGACAGACGCAGCAGCAGGAAGTGGAGGAGGAGGAATGGATGATCCCTTACAGTGATGAGGAGATGGAGGAGCCGCAAAACTGGATGCCTCCACCCGCGGAGATCAAGCGCCTCTATGAGCTGCTGGCCAAAGGGGAGGAGCTGGAGCTGCAGTGGGTTCCTCTTCCCCGCAGACCCCCGACTCCTCCACGAACACCATCGCCTGAGGGAGACGGAGACGACACGCAGGACCACACGCAGGAGCAGGCCGAGCGCAAGGCTCTCACACCGACTGAGTTTGACTTCGATGAAGAACAGACTCTGGCAACTCCCAAAAACTCTTTTCTCACTCGCCGAAGAACTCCAGgATCTTCTGCGCGCTCTACTGTCAAGCGCGAGGCTCGGCTGGACAAAGTGCTGTCAGACATGAAGCGCCACCGAAAGATCGAGGAGCAGATTTTAAGGACGGGTCGAGATCTGTTTAAAAGCGATAAAGCGCGCGCAGGCCCGGCCATCGAGAAGCCTTTATCACCCAACAgccagagagagagggagaaagagcgCGAGCGGGACAGCGACCCCAGCACCGTCTTCAGCCCCAGACAGAGGAGATACTGAAGGACAGCTCAGTCTTTCAGAGGGGATTTGGCTTCAGTTCCTCATCATTCATCATTCCACTTTGGACAATGACATGCTCATATTTTAATGATAACGTTTATTATATGGAATTGTTTTTTActgtgtgaataaataaatgtattgcttACATGCTGGTTTCTTTCTTTGTTGTagttacttatta
>TCONS_00008943
CGTCGCTGTGAGCGGATCCTCACGTACGGAAATGACGCCACTGACATCAAGGCGCCGAAATAAACAGTACTTTTTGGCCATGACAACAAAAATctgtattattttcataaataataaCCCACTGATGCGTTTAATCACCCCGCGCGGCTCCCTGTAACACTGATAGGAAGGTTTGACTCCGCCTCTTTATGTATGTGCTGATGGAGAATGTTTCTGAACGCATTAATGGTCGTTATGTGTTTCATTACTGGATTATTTGTGTGCAGCGGAGATGCAGGAGGCGCAGGACACACTGGCGGAGCGCGTGGAGTCGCTGGGAGTCGGTGAACGGGACAAAACCGGAGAAAAGGAGGAGCAGAAGGAGAAAGACGGAGATGAGACCAGCACAGCCGCTACACACACTCCGACGGAGGACAACACTGCAGAAGGACAGAAGGAGTTGAGGGAGGAGCAGAAGGAGGGAACGAGCACAGATGGAGAAGTAAACGGTGGTGAAGGACAGACGCAGCAGCAGGAAGTGGAGGAGGAGGAATGGATGATCCCTTACAGTGATGAGGAGATGGAGGAGCCGCAAAACTGGATGCCTCCACCCGCGGAGATCAAGCGCCTCTATGAGCTGCTGGCCAAAGGGGAGGAGCTGGAGCTGCAGTGGGTTCCTCTTCCCCGCAGACCCCCGACTCCTCCACGAACACCATCGCCTGAGGGAGACGGAGACGACACGCAGGACCACACGCAGGAGCAGGCCGAGCGCAAGGCTCTCACACCGACTGAGTTTGACTTCGATGAAGAACAGACTCTGGCAACTCCCAAAAACTCTTTTCTCACTCGCCGAAGAACTCCAGgATCTTCTGCGCGCTCTACTGTCAAGCGCGAGGCTCGGCTGGACAAAGTGCTGTCAGACATGAAGCGCCACCGAAAGATCGAGGAGCAGATTTTAAGGACGGGTCGAGATCTGTTTAAAAGCGATAAAGCGCGCGCAGGCCCGGCCATCGAGAAGCCTTTATCACCCAACAgccagagagagagggagaaagagcgCGAGCGGGACAGCGACCCCAGCACCGTCTTCAGCCCCAGACAGAGGAGATACTGAAGGACAGCTCAGTCTTTCAGAGGGGATTTGGCTTCAGTTCCTCATCATTCATCATTCCACTTTGGACAATGACATGCTCATATTTTAATGATAACGTTTATTATATGGAATTGTTTTTTActgtgtgaataaataaatgtattgcttA
>TCONS_00008944
CGGAAATGACGCCACTGACATCAAGGCGCCGAAATAAACAGTACTTTTTGGCCATGACAACAAAAATctgtattattttcataaataataaCCCACTGATGCGTTTAATCACCCCGCGCGGCTCCCTGTAACACTGATAGGAAGCGGAGATGCAGGAGGCGCAGGACACACTGGCGGAGCGCGTGGAGTCGCTGGGAGTCGGTGAACGGGACAAAACCGGAGAAAAGGAGGAGCAGAAGGAGAAAGACGGAGATGAGACCAGCACAGCCGCTACACACACTCCGACGGAGGACAACACTGCAGAAGGACAGAAGGAGTTGAGGGAGGAGCAGAAGGAGGGAACGAGCACAGATGGAGAAGTAAACGGTGGTGAAGGACAGACGCAGCAGCAGGAAGTGGAGGAGGAGGAATGGATGATCCCTTACAGTGATGAGGAGATGGAGGAGCCGCAAAACTGGATGCCTCCACCCGCGGAGATCAAGCGCCTCTATGAGCTGCTGGCCAAAGGGGAGGAGCTGGAGCTGCAGTGGGTTCCTCTTCCCCGCAGACCCCCGACTCCTCCACGAACACCATCGCCTGAGGGAGACGGAGACGACACGCAGGACCACACGCAGGAGCAGGCCGAGCGCAAGGCTCTCACACCGACTGAGTTTGACTTCGATGAAGAACAGACTCTGGCAACTCCCAAAAACTCTTTTCTCACTCGCCGAAGAACTCCAGgATCTTCTGCGCGCTCTACTGTCAAGCGCGAGGCTCGGCTGGACAAAGTGCTGTCAGACATGAAGCGCCACCGAAAGATCGAGGAGCAGATTTTAAGGACGGGTCGAGATCTGTTTAAAAGCGATAAAGCGCGCGCAGGCCCGGCCATCGAGAAGCCTTTATCACCCAACAgccagagagagagggagaaagagcgCGAGCGGGACAGCGACCCCAGCACCGTCTTCAGCCCCAGACAGAGGAGATACTGAAGGACAGCTCAGTCTTTCAGAGGGGATTTGGCTTCAGTTCCTCATCATTCATCATTCCACTTTGGACAATGACATGCTCATATTTTAATGATAACGTTTATTATATGGAATTGTTTTTTActgtgtgaataaataaatgtattgcttA

Function

symbol description
pagr1 Predicted to enable estrogen receptor binding activity. Acts upstream of or within brain development. Predicted to be part of MLL3/4 complex. Is expressed in brain. Orthologous to human PAGR1 (PAXIP1 associated glutamate rich protein 1).

GO:

id name namespace
GO:0033148 positive regulation of intracellular estrogen receptor signaling pathway biological_process
GO:0051568 histone H3-K4 methylation biological_process
GO:0007420 brain development biological_process
GO:1902808 positive regulation of cell cycle G1/S phase transition biological_process
GO:0044666 MLL3/4 complex cellular_component
GO:0030331 estrogen receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4801 Predicted to enable estrogen receptor binding activity. Acts upstream of or within brain development. Predicted to be part of MLL3/4 complex. Is expressed in brain. Orthologous to human PAGR1 (PAXIP1 associated glutamate rich protein 1).

Ensembl:

ensembl_id ENSDARG00000076966

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008942 False 1202 mRNA 0.52 5 3723650 3732014
TCONS_00008943 False 1241 mRNA 0.52 4 3723651 3731978
TCONS_00008944 True 1119 mRNA 0.53 5 3723677 3731978

Neighbor

gene id symbol gene type direction distance location
XLOC_004464 coa3a coding upstream 148993 3571770 ~ 3574657 (+)
XLOC_004463 g6pc3 coding upstream 412973 3301149 ~ 3310677 (+)
XLOC_004462 tmem101 coding upstream 450578 3262564 ~ 3273072 (+)
XLOC_004461 sgca coding upstream 630626 3078221 ~ 3093024 (+)
XLOC_004460 rac3b coding upstream 681621 3022882 ~ 3042029 (+)
XLOC_004466 cabp5a coding downstream 116095 3848109 ~ 3861759 (+)
XLOC_004467 nif3l1 coding downstream 139438 3871452 ~ 3909738 (+)
XLOC_004468 tbx6 coding downstream 180530 3912544 ~ 3923070 (+)
XLOC_004469 NA coding downstream 254065 3986079 ~ 3991423 (+)
XLOC_004470 zgc:123217 coding downstream 304395 4036409 ~ 4044132 (+)
XLOC_004456 NA non-coding upstream 951260 2769565 ~ 2772390 (+)
XLOC_004450 NA non-coding upstream 1116618 2578020 ~ 2607032 (+)
XLOC_004444 NA non-coding upstream 1719490 1966673 ~ 2004160 (+)
XLOC_004436 NA non-coding upstream 2645470 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 2819998 902588 ~ 903652 (+)
XLOC_004471 NA non-coding downstream 360438 4092452 ~ 4093573 (+)
XLOC_004472 NA non-coding downstream 371774 4103788 ~ 4106410 (+)
XLOC_004478 NA non-coding downstream 676645 4408659 ~ 4450452 (+)
XLOC_004479 NA non-coding downstream 696109 4428123 ~ 4473148 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G203128 NA unknown CI01000047 null 4214294 ~ 4214430 (-)