XLOC_004466 (cabp5a)


Basic Information

Item Value
gene id XLOC_004466
gene name cabp5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3848109 ~ 3861759 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008945
GCACAGACTGACGGAGGGACAGGACCATCAGCTCTTCTGCTCCTGGATAAAACACACTGACCGCACAACAGGGGTGTTGAATATCCAGCTTAAAGAAGAGACGTAGACTCCCcaaacacacagacatgactGCATGCATATTTCTACGCGGAGCCAAAATTGACCGAGAGCTGGCGGATGATGAGATTGAAGAGTTGCGTGAGGCCTTTAATGAGTTTGACAAAGATAAGGATGGTCTGATCAGCTGTAAGGATCTGGGGAACCTGATGAGGACGATGGGCTACATGCCCACCGAGATGGAGCTGATCGAGCTGGGCCAGAACATCAACATGAACCTGGGAGGCCGTGTGGACTTCGAGGACTTTGTGGAGCTCATGACCCCGAAGCTTTTGGCAGAAACCGCAGGAATGATCGGCGTGAAGGAGCTCAGAGACGCTTTCAAAGAGTTTGATATGGACGGTGACGGTGCGATCACCACTGAAGAACTGCGCTGTGCGATGACGAAATTACTGGGTGAACACATGAACCGCAGAGAGATCGACGCCGTCGTCCGAGAGGCCGATAATAACGGTGACGGAACTGTAGATTTTGAAGaaTTTGTGAAGATGTTGTCGAGTGTGTGAGAACGTCACCTTGGGTGCTGGAGATTCACAAGATATAAAGCAAAGCGTCTAATGCCAAGCCAGTGCAAAAGATATGcatatatgcacattttttttttaaaatccacaTGGAAAAAAATCCTGACAACTAtgcaaaagataaataaataaataaatctggatTTTATGCAATGCAGATATTGATCTGAGATCTGAATATGcaacatttttttctaattttaagTTTAATAGCATGAAGCTTTTATCTACGTTTTTTGTGAACGTgtttattttgacaaaaattaaaaaaccatttaattaatacatatattaattagaataaatatatgcaattcttttttacttttatcaCAGAACAAATTGCTTTCAGTATCAATTTACTAGTGAAATTATAAACAAGTCTAATATCATAACACTCCCCTCtgtattttcttctttttaaacaatatttgctttttcattcattcattcattttcttgtcggcttagtccctttattaatccggggtcgccacagcggaatgaaccgccaacttatccagcaagtttttacgcagcggatgcccttccagccgcaacccatctctgggaaacaatatTTGCTTTGTAAAATGAAATTAATGATGCAATgcgttttctgtttttttatatttgaaagtgttaaatgaaatgaaatatgtattaaattaaaaagctattaaaatggaaaagttttacatttatatatatattgcacaaatatatacatatataaataaataaatatataaatatataaatatttaaaaacagtagTGTGCAGAAACATTACCCTCAAACTATGCAAAATTGTTTGGCTTTTAGTCCTGTACAGAGCTCCTGATCTGAGATGTGGGATATTCAAACAACATTTGCTCAATAAAGTGCAGAAGGAGTGAATAAATGA
>TCONS_00008946
GACTGACGGAGGGACAGGACCATCAGCTCTTCTGCTCCTGGATAAAACACACTGACCGCACAACAGGTTGCAGGGTGTTGAATATCCAGCTTAAAGAAGAGACGTAGACTCCCcaaacacacagacatgactGCATGCATATTTCTACGCGGAGCCAAAATTGACCGAGAGCTGGCGGATGATGAGATTGAAGAGTTGCGTGAGGCCTTTAATGAGTTTGACAAAGATAAGGATGGTCTGATCAGCTGTAAGGATCTGGGGAACCTGATGAGGACGATGGGCTACATGCCCACCGAGATGGAGCTGATCGAGCTGGGCCAGAACATCAACATGAACCTGGGAGGCCGTGTGGACTTCGAGGACTTTGTGGAGCTCATGACCCCGAAGCTTTTGGCAGAAACCGCAGGAATGATCGGCGTGAAGGAGCTCAGAGACGCTTTCAAAGAGTTTGATATGGACGGTGACGGTGCGATCACCACTGAAGAACTGCGCTGTGCGATGACGAAATTACTGGGTGAACACATGAACCGCAGAGAGATCGACGCCGTCGTCCGAGAGGCCGATAATAACGGTGACGGAACTGTAGATTTTGAAGaaTTTGTGAAGATGTTGTCGAGTGTGTGAGAACGTCACCTTGGGTGCTGGAGATTCACAAGATATAAAGCAAAGCGTCTAATGCCAAGCCAGTGCAAAAGATATGcatatatgcacattttttttttaaaatccacaTGGAAAAAAATCCTGACAACTAtgcaaaagataaataaataaataaatctggatTTTATGCAATGCAGATATTGATCTGAGATCTGAATATGcaacatttttttctaattttaagTTTAATAGCATGAAGCTTTTATCTACGTTTTTTGTGAACGTgtttattttgacaaaaattaaaaaaccatttaattaatacatatattaattagaataaatatatgcaattcttttttacttttatcaCAGAACAAATTGCTTTCAGTATCAATTTACTAGTGAAATTATAAACAAG

Function

symbol description
cabp5a Predicted to enable calcium ion binding activity. Is expressed in eye. Orthologous to human CABP5 (calcium binding protein 5).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1655 Predicted to enable calcium ion binding activity. Is expressed in eye. Orthologous to human CABP5 (calcium binding protein 5).

Ensembl:

ensembl_id ENSDARG00000002576

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008945 False 1548 mRNA 0.38 7 3848109 3861759
TCONS_00008946 True 1024 mRNA 0.41 7 3848114 3861234

Neighbor

gene id symbol gene type direction distance location
XLOC_004465 pagr1 coding upstream 116095 3723650 ~ 3732014 (+)
XLOC_004464 coa3a coding upstream 273452 3571770 ~ 3574657 (+)
XLOC_004463 g6pc3 coding upstream 537432 3301149 ~ 3310677 (+)
XLOC_004462 tmem101 coding upstream 575037 3262564 ~ 3273072 (+)
XLOC_004461 sgca coding upstream 755085 3078221 ~ 3093024 (+)
XLOC_004467 nif3l1 coding downstream 9693 3871452 ~ 3909738 (+)
XLOC_004468 tbx6 coding downstream 50785 3912544 ~ 3923070 (+)
XLOC_004469 NA coding downstream 124320 3986079 ~ 3991423 (+)
XLOC_004470 zgc:123217 coding downstream 174650 4036409 ~ 4044132 (+)
XLOC_004471 NA coding downstream 230693 4092452 ~ 4093573 (+)
XLOC_004456 NA non-coding upstream 1075719 2769565 ~ 2772390 (+)
XLOC_004450 NA non-coding upstream 1241077 2578020 ~ 2607032 (+)
XLOC_004444 NA non-coding upstream 1843949 1966673 ~ 2004160 (+)
XLOC_004436 NA non-coding upstream 2769929 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 2944457 902588 ~ 903652 (+)
XLOC_004472 NA non-coding downstream 242029 4103788 ~ 4106410 (+)
XLOC_004478 NA non-coding downstream 546900 4408659 ~ 4450452 (+)
XLOC_004479 NA non-coding downstream 566364 4428123 ~ 4473148 (+)

Expression


Co-expression Network