XLOC_004467 (nif3l1)


Basic Information

Item Value
gene id XLOC_004467
gene name nif3l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3871452 ~ 3909738 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008947
agaagaagaagaagaagaagactgaCAGCCGCTGCTTTCATTAGCTCGTGGAAGCGACATATTCACTTTTCTCTCCCTCATGTTGGCCCGATGTGGGCAATTGTCTGGAAAACTTCTCCGATTGAGCAGAATCAACTTTAGCATCTCCAAAACCAGGACATTTATCTCTAGTCTTTCTTCTTGTCATTTTTCATCCCCACGTTCTGTTTTCACTTCTTTTTTTGCATATTCAGCTCTCCCACGTTTCTCTCTCCATCACTCTCATCTCTCAGCATCCTGTTATCCTGCACTGAGCTCTGACAGAACGATCCGTTTTCTCTCTGCATCCACTCGTCCTGCCGAACACATGGATTTAAAGGGAGTTCTGGAGGTTTTGGAACAGCTCGCTCCATTATCATTGGCTGAATCCTGGGATAATGTTGGCCTATTGGTGGAACCTAGTAGACCTCGTCCAATCAAAACAATCCTGCTCACTAATGACCTGACGGCGGCGGTCATGGATGAAGCTGTAGGGATGAAGTGTGATCTGATCGTCTCCTACCATCCGCCACTCTTTCGGCCTTTCAAGCGTTTGCTGCAGAAGGACTGGAAGCAGCGTTTGGCAGTCAGAGCAATCGAAAACGGCATTGGCATTTTCTCCCCACACACTTCATGGGACAGTGTTGAGGGAGGCGTTAATGACTGGCTTGTTGGAGGAATGGGTAGAGGTAAAGTGTCGGTATTAAGTCAAGCAGTCTCTAGCGGTGCACAGAAACACAGGATTGAGTTCTCATGCATGGATGATGGAGAAGTAAACAGCCTTTTGGAGCAGCTGAGACACACAGAGGGCAGCGAAACCTTTCAGTGCACTAGAATAAAAAGTGAGAGTGGAGGACAGCAGGTGAATCTGACCTGTAGGAGCTCAGCGTTGACTGGTGCGGTGCAGATTCTGCTTTCACATCCACACACCAGCAAATCCCTGAACATCACACAAGTCCAACAGCCTCCTCTGTTGGGCTGTGGTCAGGGTCGACTCAGTGTTCTGGAGGAACCAGTGTCTGTTTCTACAGCAGTGCAGAAGATGAAAACACACTTGGGTTTGCCTCATTTGAGACTGGCCTTGGGGGACCAGCAGACATTAGACTCGATGGTGAAGACGGTTGCAGTGTGTGCCGGTTCTGGAGCTTCTGTCATACAAGGAGTAACAGCAGACCTCTACATCACTGGTGAGATGTCCCATCATGAGGTGCTGGATGCGGTTTCTAAAGGCACCAGCGTGATCCTCAGCGAGCACAGCAACAGCGAGAGAGGCTTTCTGGGTGTTTTCAGAGAGAGACTAAGCGCTCGACTGGACCACACGGTTAGCATAGTGATCTCTCAGACTGACCGAGATCCACTACAGGTGGTCTGATCTCACTCTCACAGCCGTTTACTGTGTAATTCAGCCATACTGGACTGCATATATGCATATCACAAAGAATATTCAATGTGTGACCTGGAGTTTGTAAGTGCGACAGTAACATTGTCCTATAAACAAGTGAAATAAACCATATcatctagcttttttttt
>TCONS_00008948
AATCGAAAACGGCATTGGCATTTTCTCCCCACACACTTCATGGGACAGTGTTGAGGGAGGCGTTAATGACTGGCTTGTTGGAGGAATGGGTAGAGGTAAAGTGTCGGTATTAAGTCAAGCAGTCTCTAGCGGTGCACAGAAACACAGGATTGAGTTCTCATGCATGGATGATGGAGAAGTAAACAGCCTTTTGGAGCAGCTGAGACACACAGAGGGCAGCGAAACCTTTCAGTGCACTAGAATAAAAAGTGAGAGTGGAGGACAGCAGGTGAATCTGACCTGTAGGAGCTCAGCGTTGACTGGTGCGGTGCAGATTCTGCTTTCACATCCACACACCAGCAAATCCCTGAACATCACACAAGTCCAACAGCCTCCTCTGTTGGGCTGTGGTCAGGGTCGACTCAGTGTTCTGGAGGAACCAGTGTCTGTTTCTACAGCAGTGCAGAAGATGAAAACACACTTGGGTTTGCCTCATTTGAGACTGGCCTTGGGGGACCAGCAGACATTAGACTCGATGGTGAAGACGGTTGCAGTGTGTGCCGGTTCTGGAGCTTCTGTCATACAAGGAGTAACAGCAGACCTCTACATCACTGGTGAGATGTCCCATCATGAGGTGCTGGATGCGGTTTCTAAAGGCACCAGCGTGATCCTCAGCGAGCACAGCAACAGCGAGAGAGGCTTTCTGGGTGTTTTCAGAGAGAGACTAAGCGCTCGACTGGACCACACGACCAAACTGCAGCAGTAAGAACAAACTGTGTGTCCAGACCTCCACCTTCACCAGCAGCTGATCTCAGGCCAGTCATACACtaccttttaaaaaatgctgggttcgcATTTGGACAACATGAGGGatttaagttaacttgttagtttttacaaatataagtggattgaacttaaaacaattaaggtgtcctaaaaaactc

Function

symbol description
nif3l1 Predicted to be located in nucleus. Predicted to be active in mitochondrion. Orthologous to human NIF3L1 (NGG1 interacting factor 3 like 1).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050706-80 Predicted to be located in nucleus. Predicted to be active in mitochondrion. Orthologous to human NIF3L1 (NGG1 interacting factor 3 like 1).

Ensembl:

ensembl_id ENSDARG00000045249

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008947 False 1549 mRNA 0.48 7 3871452 3890216
TCONS_00008948 True 926 mRNA 0.48 7 3875901 3909738

Neighbor

gene id symbol gene type direction distance location
XLOC_004466 cabp5a coding upstream 9693 3848109 ~ 3861759 (+)
XLOC_004465 pagr1 coding upstream 139438 3723650 ~ 3732014 (+)
XLOC_004464 coa3a coding upstream 296795 3571770 ~ 3574657 (+)
XLOC_004463 g6pc3 coding upstream 560775 3301149 ~ 3310677 (+)
XLOC_004462 tmem101 coding upstream 598380 3262564 ~ 3273072 (+)
XLOC_004468 tbx6 coding downstream 2806 3912544 ~ 3923070 (+)
XLOC_004469 NA coding downstream 76341 3986079 ~ 3991423 (+)
XLOC_004470 zgc:123217 coding downstream 126671 4036409 ~ 4044132 (+)
XLOC_004471 NA coding downstream 182714 4092452 ~ 4093573 (+)
XLOC_004472 NA coding downstream 194050 4103788 ~ 4106410 (+)
XLOC_004456 NA non-coding upstream 1099062 2769565 ~ 2772390 (+)
XLOC_004450 NA non-coding upstream 1264420 2578020 ~ 2607032 (+)
XLOC_004444 NA non-coding upstream 1867292 1966673 ~ 2004160 (+)
XLOC_004436 NA non-coding upstream 2793272 1074403 ~ 1078180 (+)
XLOC_004434 NA non-coding upstream 2967800 902588 ~ 903652 (+)
XLOC_004478 NA non-coding downstream 498921 4408659 ~ 4450452 (+)
XLOC_004479 NA non-coding downstream 518385 4428123 ~ 4473148 (+)

Expression


Co-expression Network