Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_004472

Basic Information

Item	Value
gene id	XLOC_004472
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007123.7
NCBI id	CM002896.2
chromosome length	49182954
location	4103788 ~ 4106410 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010718
GTACCGTATCCCTGGAGTATGAtgagaaaaaatacatttacttctCTGATTCCATTGATTCTGCACCGGGTTGTGAGGTGAGCACACATGTGGAGGTCTATGAGGAATATTTTTTCCTCAAGGAGGTCATTGGAGGAGTAATTGGAGGACTGTTTATCGTCTCACTCATCACAGCCGCGCTCTATAAGGCTGGCTTTTTTGAAAGAAAGGCCAAGCAGCAGAT

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00010718	True	223	lncRNA	0.44	3	4103788	4106410

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_004471	NA	coding	upstream	10215	4092452 ~ 4093573 (+)
XLOC_004470	zgc:123217	coding	upstream	59656	4036409 ~ 4044132 (+)
XLOC_004469	NA	coding	upstream	112365	3986079 ~ 3991423 (+)
XLOC_004468	tbx6	coding	upstream	180718	3912544 ~ 3923070 (+)
XLOC_004467	nif3l1	coding	upstream	194050	3871452 ~ 3909738 (+)
XLOC_004473	si:dkey-32n7.4	coding	downstream	7991	4114401 ~ 4145033 (+)
XLOC_004474	itgam	coding	downstream	41304	4147714 ~ 4157240 (+)
XLOC_004475	itgam	coding	downstream	54394	4160804 ~ 4167750 (+)
XLOC_004476	mapk7	coding	downstream	113943	4220353 ~ 4238827 (+)
XLOC_004477	mmp25b	coding	downstream	154369	4260779 ~ 4278329 (+)
XLOC_004456	NA	non-coding	upstream	1331398	2769565 ~ 2772390 (+)
XLOC_004450	NA	non-coding	upstream	1496756	2578020 ~ 2607032 (+)
XLOC_004444	NA	non-coding	upstream	2099628	1966673 ~ 2004160 (+)
XLOC_004478	NA	non-coding	downstream	302249	4408659 ~ 4450452 (+)
XLOC_004479	NA	non-coding	downstream	321713	4428123 ~ 4473148 (+)
XLOC_004480	CABZ01030103.1	non-coding	downstream	390954	4497364 ~ 4497479 (+)
XLOC_004483	NA	non-coding	downstream	622607	4729017 ~ 4734988 (+)
XLOC_004484	NA	non-coding	downstream	642161	4748571 ~ 4751852 (+)

Expression

Co-expression Network