XLOC_004486 (ghrhr2)


Basic Information

Item Value
gene id XLOC_004486
gene name ghrhr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4845448 ~ 4854555 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008964
CGTCATGAACTTTTATCATGCCTTCATGATCTGGACTTTTACGGTTACATGTGAAGGGGTGAAGACAGTTCATCCTGAGTGTTGGATAGTGTTGCATCTGCAAGAGAAAGAAGCTGAATGTCTGGTCAAAATGTCTTTGTTAAACATTAATGGTACCAATGCAGGTTGTCTGGTTGAGTGGGATGGTGTGAACTGCTGGCCTGCTGTCAGTGTAGGAGAAAGAGTCTCAGTGTCTTGCCCTCCTCTTCTGAAATCTCACGAGCTGATCAGCCGCACCTGCACTAGTAAGGGATGGAGTAACATGAGTGTGCCTTATTACATCGCCTGCTTTCAGGACAACAGCACAGAAGAGGAAGAGATTGGACACATTAGTGAATATTTTGCGAGGGTGAAGCTGATCTACACAGTTGGATATGGCATGTCCCTCAGCTCCCTCTGTATTGCAGTCTTCATCTTCTGTATCTTTAGGAAGCTTCTGTGCACACGGATCTACATCCACCTCAACCTCTTCTCCACATTCATCCTGAGGGCTTTGGCAGTATTTGtgaaagatgctgttttattCGCTGATGAGACTGTCAATCACTGCACAGTCTCCACGGTTTTGTGCAAGGCATCGGTGACTTTCTTCCAATACTGCGTGTTATCAAACTTCTACTGGCTGCTTGTTGAGGGACTTTACCTTCAGACACTGCTTACGTTCACCTTCGCCCACAAAAGAACATTTTTCTGGTGCTATACACTTGTTGGCTGGGGGACTCCATCTGTCACAGTAACAATCTGGACGTTCCTCAAATATTCATATGACGATTATGGGTGCTGGGATGACCTGGACAGTGGCTTTTGGTGGATCATCAAAATTCCCATTTTGCTTTCTGTATTGGTGAACTTTCTGATGTTCATTAATATAAGCAGGATtataattgtaaaaacaaaaaccccTGACTCAAATGGAGGAGACAAGCGATTTTACAGACGACTGGCCAAATCAACTCTTCTGCTAATCCCTCTTTTCGGAGTGCACTACATTGTATTTGCTTTGTTTCCTGAACATGTTGGCCTAGAGGCGAGACTCTTCTTTGAACTTGTGCTGGGCTCCTTCCAGGGTTTCATTGTGGCGTTGTTATACTGCTTCTTGAACAGTGAGGTCCAAAATGAAATACGGAAAGAGATAGAGAAATACAAGTCCCGAACCGACATCAACACTTTCCACATGGCAACTCAAGACTTTATTGCATAA

Function

symbol description
ghrhr2 Predicted to enable G protein-coupled peptide receptor activity and peptide hormone binding activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017046 peptide hormone binding molecular_function
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-194 Predicted to enable G protein-coupled peptide receptor activity and peptide hormone binding activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000099218

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008964 True 1240 mRNA 0.44 13 4845448 4854555

Neighbor

gene id symbol gene type direction distance location
XLOC_004485 NA coding upstream 10134 4834849 ~ 4835314 (+)
XLOC_004484 NA coding upstream 93596 4748571 ~ 4751852 (+)
XLOC_004483 NA coding upstream 110460 4729017 ~ 4734988 (+)
XLOC_004482 kansl1a coding upstream 119788 4686145 ~ 4725660 (+)
XLOC_004481 si:dkey-94f20.4 coding upstream 268632 4573696 ~ 4576816 (+)
XLOC_004487 scn4aa coding downstream 14693 4869248 ~ 4893492 (+)
XLOC_004488 cd79b coding downstream 46426 4900981 ~ 4906924 (+)
XLOC_004489 plekhm1 coding downstream 65896 4920451 ~ 4963153 (+)
XLOC_004490 arhgap27 coding downstream 116960 4971515 ~ 5044931 (+)
XLOC_004491 kif22 coding downstream 193489 5048044 ~ 5071836 (+)
XLOC_004480 CABZ01030103.1 non-coding upstream 347969 4497364 ~ 4497479 (+)
XLOC_004479 NA non-coding upstream 372300 4428123 ~ 4473148 (+)
XLOC_004492 AL929469.5 non-coding downstream 197007 5051562 ~ 5051697 (+)
XLOC_004493 AL929469.4 non-coding downstream 197888 5052443 ~ 5052578 (+)
XLOC_004494 AL929469.2 non-coding downstream 202666 5057221 ~ 5057356 (+)
XLOC_004495 AL929469.1 non-coding downstream 207012 5061567 ~ 5061697 (+)
XLOC_004497 AL929469.3 non-coding downstream 235260 5089815 ~ 5089930 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_03321589_03328761 GHRHR2 coding CI01000047 null 3319692 ~ 3328761 (-)