XLOC_004508 (si:ch211-131k2.3)


Basic Information

Item Value
gene id XLOC_004508
gene name si:ch211-131k2.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6002715 ~ 6006865 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008992
AAAAATAGAGGCAGTCATTCTGCCAGACTTACAGACATATACTGAGCTCTCCAGTCAACTCTGACTTCtttaaagcaaaaagaaaacaaaaaacagcattgCTTATGAAaaatttacaacattaaaacaggAAAGTACATCAAAGTCTATCAGAAGTCAAGATGCCGAAGATTGTGAGGCCAGAAAACTGccaaCCAGCCAAAACACTGTGGTATGACCGGAAAAAGTATGTCACTATCAACTTTGTGGTTCAAAACCCAAAAGATGTTCAGGTAGATGTTCAGGACAAAAAGATTATTTTAAGCTGCAAAGATGTTGACGACAACAATATCTACAATGAGATAGAATTTTATGACCGTGTATTAAAAGCTGATTCAAGGGAGAAAGTCCACGACAGAACAATTAATGTGTTAATAAGGAAAGTAAAGGAAAATGTGGCATGGCCTCGACTCCAGAAAGATACAGCaaagCCGGCATGGTTGTTAGTAGACTTTGATAACTGGAGAGATTGGGAACATGAAGAGGAAGAAGGCATGGCAGAATATGAGCAATATGTGGATATGCTTAATGACGTGAAGAATAAAGGAGAGCCACCTGCCATGGATGACCTGGATGATCTGAGTGACTGAGCAGTCTGCCATCGATCAAGATCAACCAAACtttgaaaaaaagtaaaagataATTCATAGTGCCACATTAGATTAGAAAAATAATCCTTTGAAATTTGTTGGATCAGTACATAAACTTTATTGGTAGAAAAGGTAAGATTCAGTGTATGCAGgctatcttgttgttgttgtttatttaatttcctcTTTTTTACCTTGTATTCTTGGAAAACATTGCTTTGTAATGAACAAAATACGTAATCATTTTCTATTTGTGATGCAACCGAGCAAACGATTTATGTGTTTTCATATGCTGTATAATGTTTTGTACATTAAAAAAGTTGAAATCTG

Function

GO:

id name namespace
GO:0051131 chaperone-mediated protein complex assembly biological_process
GO:0006457 protein folding biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051879 Hsp90 protein binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-210 Predicted to enable Hsp90 protein binding activity and chaperone binding activity. Predicted to be involved in chaperone-mediated protein complex assembly and protein folding. Predicted to be active in cytosol and nucleus. Orthologous to human AARSD1 (alanyl-tRNA synthetase domain containing 1).

Ensembl:

ensembl_id ENSDARG00000079462

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008992 True 959 mRNA 0.36 7 6002715 6006865

Neighbor

gene id symbol gene type direction distance location
XLOC_004507 si:ch211-131k2.2 coding upstream 21138 5977777 ~ 5981577 (+)
XLOC_004506 LO017821.1 coding upstream 192436 5775853 ~ 5810279 (+)
XLOC_004505 dlx3b coding upstream 290795 5708400 ~ 5711920 (+)
XLOC_004504 ace coding upstream 420655 5530247 ~ 5582060 (+)
XLOC_004503 drd6b coding upstream 542512 5458462 ~ 5460203 (+)
XLOC_004509 g6pca.2 coding downstream 34710 6041575 ~ 6048286 (+)
XLOC_004510 sgms1 coding downstream 58796 6065661 ~ 6114296 (+)
XLOC_004511 asah2 coding downstream 110817 6117682 ~ 6142673 (+)
XLOC_004512 NA coding downstream 137840 6144705 ~ 6152579 (+)
XLOC_004513 NA coding downstream 142142 6149007 ~ 6153121 (+)
XLOC_004497 AL929469.3 non-coding upstream 912785 5089815 ~ 5089930 (+)
XLOC_004495 AL929469.1 non-coding upstream 941018 5061567 ~ 5061697 (+)
XLOC_004494 AL929469.2 non-coding upstream 945359 5057221 ~ 5057356 (+)
XLOC_004493 AL929469.4 non-coding upstream 950137 5052443 ~ 5052578 (+)
XLOC_004492 AL929469.5 non-coding upstream 951018 5051562 ~ 5051697 (+)
XLOC_004514 NA non-coding downstream 150098 6156963 ~ 6171928 (+)
XLOC_004515 NA non-coding downstream 188305 6195170 ~ 6451609 (+)
XLOC_004517 CU184911.1 non-coding downstream 701264 6708129 ~ 6708243 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G200133 NA non-coding CI01000047 null 2596436 ~ 2598997 (+)