XLOC_004509 (g6pca.2)


Basic Information

Item Value
gene id XLOC_004509
gene name g6pca.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6041575 ~ 6048286 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008993
GTCACACTAGACGAGCTCTGAGAGAATCTAAACATGGATGCAGTGATGGATACAATGCACGGGTTTGGTGTGAGCAGCACACAGTACCTTCAGACTCATTACAAAGATGCCCAAGGATGGTTTCTTTTCGTCTCCTTCGCCGCAGATCTGAGGAACACCTTCTTCATCTTCTTTCCCATTTGGTTCCATCTGAAAGAGTCAGTGGGCATCAAGCTTATCTGGGTGGCAGTGATAGGAGATTGGCTTAATTTAGTCTTCAAATGGATCCTTTTTGGAGAACGTCCATACTGGTGGGTCCATGAGACGTCCTACTACATGAACAGCTCAGCGCCTCATATTGAACAGTATCCCATGACCTGTGAGACTGGCCCAGGTAGCCCATCAGGTCATGCTATGGGTGCTGCTGGTGTTTACTACACACTGGTCACCTCCATCCTCGCCATAATGCTTAGCAAAGGGAAGAAATCAACATCCAATAGCCTATACTTGCGTGGCTCACTTTGGACACTCTTCTGGACGGTCCAGATCTGTGTTTGTCTCTCTCGGGTCTTCATCGCCGCTCATTTCCCACATCAAGTTTTCGCTGGTGTCATTTCAGGCATGATTGTTGCCGAGGCTTTCAACAGGCAGAAATGGATCTACAGTGCGAGTCTAAAGAATTACTTCAACGTCACGCTCTTCCTGCTCTCGTTCGCTGTGGGTTTGTACGTCCTCCTGAAGGCTCTCGGTGTGGATCTGCTCTGGACTCTTGAGAAAGCCCAGAAATGGTGCGCCAACCCAGCCTGGGTTCATTTGGACACCACACCGTTCGCAAGTCTGCTGAGGAACATGGGCACCCTGTTCGGTCTGGGGCTCGGTCTTCATTCACCGCTGTACACAGAGAGCAAGAAAAGCAGCAACGCTTTTGTCAGGATCACCTGTATTATCGCATCTCTGCTCCTGCTGCATCTCTTTGACTCCATCAAACCACCAACGCACACGGCTGCTCTCTTCTACCTCCTGTCCTTCTGCAAAAGTGCCACCGTTCCCCTCGTCACGGTCAGCATCATCCCGTACTGCTTATCCGGAGCCCTCGGGTTACAGAGCAAAAAACAGCTTTAGGCTTGAAATGAACTGTATTAAGACTGTAAGGAAAGTTCACTAGTTCAATAGTGCATCCCGCACTGCAAATAATGCTGcaaaaatgtcttgtttctagaccaaatatctaaaaattattaaatcaaggaAGATTTTCCAGACAAGCAGATAAaagtgtcttgtttttagaaataatatggcaaaattaagcaagtttttcccttaaaacaacactgtaaaacccaaaaagttaaggtaactcaaactatttgaggaaaccaattgtaacaaaccatttaagttcaaaaactactcctaatgagtactttgaacttaatccatttgagtaaacgaagcaatttgagcacagtaaaacccaatagataaagagaactcaaaccaactgattactgtaaagcccaataatttaagaaaaactcaaaccgtttgaggaaactgattgctacaaaccatttgagttaaaaaaaataatctatatgagtactgtgaacttactccatttaagttgaggtACTGAGGTATTAaactaactcattaccttcaacactgagttcaaaagtCTCTTTaaattagtagaattaactttcagtacattttgagttaactacactcatttcatttgataaagactgttgggttttacagtgaagcAAAAATAATCAACCAATGggataagctaaataatcttgtttttccttttgacataagatcaTGTTGCTTAcacaattggcagattattttgcttgtttaaaggaaaaactcaaataattttgacatatttttactgaaaacaagacaatatgtttagcttgtctagaaaatgctttttgatttaagaatctttAGATTTTTGGACTATAAATGAGACAAAAgcaatttttttgcagtgcattagTCGAAGGAACACTGTGTTTTATAACTACGGGATGCTGATAAACTAGAGTTTAAATTATGCACTGTTATTGCATGTGTTGTTTTAGCGTTTTTATATATTAGTGCCTTTGGATCTGCATGAAAAGGTCTGGCTTTTAATGGAAGAAGTGTTAGGTTCTTTTTTGAGAACTGAAATGGTGAACTTATATATAGGAGGACAGGTTTTGCCCTCCCTAAGATgtgtactttagttttttttttttttttttggatgcatTTTCTGTAATATAAACTATTTTTTGGAAAAATTCTTTaggtcatttttaataaaaagctgaaaataa
>TCONS_00008994
ACACTAGACGAGCTCTGAGAGAATCTAAACATGGATGCAGTGATGGATACAATGCACGGGTTTGGTGTGAGCAGCACACAGTACCTTCAGACTCATTACAAAGATGCCCAAGGATGGTTTCTTTTCGTCTCCTTCGCCGCAGATCTGAGGAACACCTTCTTCATCTTCTTTCCCATTTGGTTCCATCTGAAAGAGTCAGTGGGCATCAAGCTTATCTGGGTGGCAGTGATAGGAGATTGGCTTAATTTAGTCTTCAAATGGATCCTTTTTGGAGAACGTCCATACTGGTGGGTCCATGAGACGTCCTACTACATGAACAGCTCAGCGCCTCATATTGAACAGTATCCCATGACCTGTGAGACTGGCCCAGGTAGCCCATCAGGTCATGCTATGGGTGCTGCTGGTGTTTACTACACACTGGTCACCTCCATCCTCGCCATAATGCTTAGCAAAGGGAAGAAATCAACATCCAATAGCCTGTAAGTCAATCCCTATCATACAATAAAGTCATTTGACATCACCTGGAGCTTTGGTTTCAAATTAGTGGCTTTGTGCAATGCATTCATACTGTTTGTTTTCTTCTCAGATACTTGCGTGGCTCACTTTGGACACTCTTCTGGACGGTCCAGATCTGTGTTTGTCTCTCTCGGGTCTTCATCGCCGCTCATTTCCCACATCAAGTTTTCGCTGGTGTCATTTCAGGCATGATTGTTGCCGAGGCTTTCAACAGGCAGAAATGGATCTACAGTGCGAGTCTAAAGAATTACTTCAACGTCACGCTCTTCCTGCTCTCGTTCGCTGTGGGTTTGTACGTCCTCCTGAAGGCTCTCGGTGTGGATCTGCTCTGGACTCTTGAGAAAGCCCAGAAATGGTGCGCCAACCCAGCCTGGGTTCATTTGGACACCACACCGTTCGCAAGTCTGCTGAGGAACATGGGCACCCTGTTCGGTCTGGGGCTCGGTCTTCATTCACCGCTGTACACAGAGAGCAAGAAAAGCAGCAACGCTTTTGTCAGGATCACCTGTATTATCGCATCTCTGCTCCTGCTGCATCTCTTTGACTCCATCAAACCACCAACGCACACGGCTGCTCTCTTCTACCTCCTGTCCTTCTGCAAAAGTGCCACCGTTCCCCTCGTCACGGTCAGCATCATCCCGTACTGCTTATCCGGAGCCCTCGGGTTACAGAGCAAAAAACAGCTTTAGGCTTGAAATGAACTGTATTAAGACTGTAAGGAAAGTTCACTAGTTCAATAGTGCATCCCGCACTGCAAATAATGCTGcaaaaatgtcttgtttctagaccaaatatctaaaaattattaaatcaaggaAGATTTTCCAGACAAGCAGATAAaagtgtcttgtttttagaaataatatggcaaaattaagcaagtttttcccttaaaacaacactgtaaaacccaaaaagttaaggtaactcaaactatttgaggaaaccaattgtaacaaaccatttaagttcaaaaactactcctaatgagtactttgaacttaatccatttgagtaaacgaagcaatttgagcacagtaaaacccaatagataaagagaactcaaaccaactgattactgtaaagcccaataatttaagaaaaactcaaaccgtttgaggaaactgattgctacaaaccatttgagttaaaaaaaataatctatatgagtactgtgaacttactccatttaagttgaggtACTGAGGTATTAaactaactcattaccttcaacactgagttcaaaagtCTCTTTaaattagtagaattaactttcagtacattttgagttaactacactcatttcatttgataaagactgttgggttttacagtgaagcAAAAATAATCAACCAATGggataagctaaataatcttgtttttccttttgacataagatcaTGTTGCTTAcacaattggcagattattttgcttgtttaaaggaaaaactcaaataattttgacatatttttactgaaaacaagacaatatgtttagcttgtctagaaaatgctttttgatttaagaatctttAGATTTTTGGACTATAAATGAGACAAAAgcaatttttttgcagtgcattagTCGAAGGAACACTGTGTTTTATAACTACGGGATGCTGATAAACTAGAGTTTAAATTATGCACTGTTATTGCATGTGTTGTTTTAGCGTTTTTATATATTAGTGCCTTTGGATCTGCATGAAAAGGTCTGGCTTTTAATGGAAGAAGTGTTAGGTTCTTTTTTGAGAACTGAAATGGTGAACTTATATATAGGAGGACAGGTTTTGCCCTCCCTAAGATgtgtactttagttttttttttttttttttggatgcatTTTCTGTAATATAAACTATTTTTTGGAAAAATTCTTTaggtcatttttaataaaaagctgaaaataa
>TCONS_00008995
TGAGAGAATCTAAACATGGATGCAGTGATGGATACAATGCACGGGTTTGGTGTGAGCAGCACACAGTACCTTCAGACTCATTACAAAGATGCCCAAGGATGGTTTCTTTTCGTCTCCTTCGCCGCAGATCTGAGGAACACCTTCTTCATCTTCTTTCCCATTTGGTTCCATCTGAAAGAGTCAGTGGGCATCAAGCTTATCTGGGTGGCAGTGATAGGAGATTGGCTTAATTTAGTCTTCAAATGGATCCTTTTTGGAGAACGTCCATACTGGTGGGTCCATGAGACGTCCTACTACATGAACAGCTCAGCGCCTCATATTGAACAGTATCCCATGACCTGTGAGACTGGCCCAGGTAGCCCATCAGGTCATGCTATGGGTGCTGCTGGTGTTTACTACACACTGGTCACCTCCATCCTCGCCATAATGCTTAGCAAAGGGAAGAAATCAACATCCAATAGCCTATACTTGCGTGGCTCACTTTGGACACTCTTCTGGACGGTCCAGATCTGTGTTTGTCTCTCTCGGGTCTTCATCGCCGCTCATTTCCCACATCAAGTTTTCGCTGGTGTCATTTCAGGTAAGCATTTTTAGATGAAACTGAAGTTTTTCACTGCATGTAAAAAGATGTTTGTGACAGAATAGGGCATCAATGGAAATTGAACCCATGACCAGTAATAGCTGTTGGAAAAATCaggaataaataaattttttaaatacattacaacAGAAAATGGTTATAATGGTTGTAATATAAA
>TCONS_00008996
GTCCTCAAACAAAACAAGTCAGCTTATAGGCCTATAAGTCGACAAAAATGTAAACTAATATTCACAGAAATCTTCGTGATGGATTTAACTTACACAAggttaaaatgtttcaaattgtTTCCTTCATTAGTTTCGGTTTTATATCGATTCTTATGTTGTTAAATGAACGTATATTGTATTATCTTTGTATAactatgatgtacttttaaatttgtgtttatgACACCAATAATTTGACTATTTTGCTTAACTTTAACGTGGTTTTCCCTTTGCTTACTGTGTGGCAATTAGCATATAAGAAATTAGCATCTTCAAAGCTATTTCATCTTATAGCAAAAATCCCTCACTCAACTTGATCTTCTTCTTGATACAGGTAGCCCATCAGGTCATGCTATGGGTGCTGCTGGTGTTTACTACACACTGGTCACCTCCATCCTCGCCATAATGCTTAGCAAAGGGAAGAAATCAACATCCAATAGCCTATACTTGCGTGGCTCACTTTGGACACTCTTCTGGACGGTCCAGATCTGTGTTTGTCTCTCTCGGGTCTTCATCGCCGCTCATTTCCCACATCAAGTTTTCGCTGGTGTCATTTCAGGCATGATTGTTGCCGAGGCTTTCAACAGGCAGAAATGGATCTACAGTGCGAGTCTAAAGAATTACTTCAACGTCACGCTCTTCCTGCTCTCGTTCGCTGTGGGTTTGTACGTCCTCCTGAAGGCTCTCGGTGTGGATCTGCTCTGGACTCTTGAGAAAGCCCAGAAATGGTGCGCCAACCCAGCCTGGGTTCATTTGGACACCACACCGTTCGCAAGTCTGCTGAGGAACATGGGCACCCTGTTCGGTCTGGGGCTCGGTCTTCATTCACCGCTGTACACAGAGAGCAAGAAAAGCAGCAACGCTTTTGTCAGGATCACCTGTATTATCGCATCTCTGCTCCTGCTGCATCTCTTTGACTCCATCAAACCACCAACGCACACGGCTGCTCTCTTCTACCTCCTGTCCTTCTGCAAAAGTGCCACCGTTCCCCTCGTCACGGTCAGCATCATCCCGTACTGCTTATCCGGAGCCCTCGGGTTACAGAGCAAAAAACAGCTTTAGGCTTGAAATGAACTGTATTAAGACTGTAAGGAAAGTTCACTAGTTCAATAGTGCATCCCGCACTGCAAATAATGCTGcaaaaatgtcttgtttctagaccaaatatctaaaaattattaaatcaaggaAGATTTTCCAGACAAGCAGATAAaagtgtcttgtttttagaaataatatggcaaaattaagcaagtttttcccttaaaacaacactgtaaaacccaaaaagttaaggtaactcaaactatttgaggaaaccaattgtaacaaaccatttaagttcaaaaactactcctaatgagtactttgaacttaatccatttgagtaaacgaagcaatttgagcacagtaaaacccaatagataaagagaactcaaaccaactgattactgtaaagcccaataatttaagaaaaactcaaaccgtttgaggaaactgattgctacaaaccatttgagttaaaaaaaataatctatatgagtactgtgaacttactccatttaagttgaggtACTGAGGTATTAaactaactcattaccttcaacactgagttcaaaagtCTCTTTaaattagtagaattaactttcagtacattttgagttaactacactcatttcatttgataaagactgttgggttttacagtgaagcAAAAATAATCAACCAATGggataagctaaataatcttgtttttccttttgacataagatcaTGTTGCTTAcacaattggcagattattttgcttgtttaaaggaaaaactcaaataattttgacatatttttactgaaaacaagacaatatgtttagcttgtctagaaaatgctttttgatttaagaatctttAGATTTTTGGACTATAAATGAGACAAAAgcaatttttttgcagtgcattagTCGAAGGAACACTGTGTTTTATAACTACGGGATGCTGATAAACTAGAGTTTAAATTATGCACTGTTATTGCATGTGTTGTTTTAGCGTTTTTATATATTAGTGCCTTTGGATCTGCATGAAAAGGTCTGGCTTTTAATGGAAGAAGTGTTAGGTTCTTTTTTGAGAACTGAAATGGTGAACTTATATATAGGAGGACAGGTTTTGCCCTCCCTAAGATgtgtactttagttttttttttttttttttggatgcatTTTCTGTAATATAAACTATTTTTTGGAAAAATTCTTTaggtcatttttaataaaaagctgaaaataa

Function

GO:

id name namespace
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0061959 response to (R)-carnitine biological_process
GO:0006094 gluconeogenesis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004346 glucose-6-phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-17 Predicted to enable glucose-6-phosphatase activity. Acts upstream of or within response to (R)-carnitine. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in liver; male organism; and yolk syncytial layer. Human ortholog(s) of this gene implicated in hepatocellular carcinoma and type 2 diabetes mellitus. Orthologous to human G6PC1 (glucose-6-phosphatase catalytic subunit 1).

Ensembl:

ensembl_id ENSDARG00000013721

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008993 False 2318 mRNA 0.40 5 6041575 6048286
TCONS_00008994 False 2422 lncRNA 0.39 4 6041578 6048286
TCONS_00008995 False 758 lncRNA 0.43 4 6041593 6044881
TCONS_00008996 True 2318 lncRNA 0.37 3 6043999 6048286

Neighbor

gene id symbol gene type direction distance location
XLOC_004508 si:ch211-131k2.3 coding upstream 34710 6002715 ~ 6006865 (+)
XLOC_004507 si:ch211-131k2.2 coding upstream 59998 5977777 ~ 5981577 (+)
XLOC_004506 LO017821.1 coding upstream 231296 5775853 ~ 5810279 (+)
XLOC_004505 dlx3b coding upstream 329655 5708400 ~ 5711920 (+)
XLOC_004504 ace coding upstream 459515 5530247 ~ 5582060 (+)
XLOC_004510 sgms1 coding downstream 17375 6065661 ~ 6114296 (+)
XLOC_004511 asah2 coding downstream 69396 6117682 ~ 6142673 (+)
XLOC_004512 NA coding downstream 96419 6144705 ~ 6152579 (+)
XLOC_004513 NA coding downstream 100721 6149007 ~ 6153121 (+)
XLOC_004514 NA coding downstream 108677 6156963 ~ 6171928 (+)
XLOC_004497 AL929469.3 non-coding upstream 951645 5089815 ~ 5089930 (+)
XLOC_004495 AL929469.1 non-coding upstream 979878 5061567 ~ 5061697 (+)
XLOC_004494 AL929469.2 non-coding upstream 984219 5057221 ~ 5057356 (+)
XLOC_004493 AL929469.4 non-coding upstream 988997 5052443 ~ 5052578 (+)
XLOC_004492 AL929469.5 non-coding upstream 989878 5051562 ~ 5051697 (+)
XLOC_004515 NA non-coding downstream 146884 6195170 ~ 6451609 (+)
XLOC_004517 CU184911.1 non-coding downstream 659843 6708129 ~ 6708243 (+)

Expression


Co-expression Network