XLOC_004510 (sgms1)


Basic Information

Item Value
gene id XLOC_004510
gene name sgms1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6065661 ~ 6114296 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008997
AGTGATCACAAACCCCAGAAAAACCTCCATCGGCGGTGGTCTACGTGCACCAACTACCAACAACCCATCAACTTCAGCTGATTTCTATGCAACTCCAAGCACACGCGTGCTGGGCAGACCACAGACTCCCCAAGACGTCTGTATGTGGGTGTTTTCTACACTGACTTTCTTCAGGATGAACCTCAAAGCACATGCGTTCTGTGGGTTTGTGAAGACGAGCGCTTGCGGTCAGACATCTCTGAAGAGGTTGTAGGAGTGATCTGGAATTTGTAAGCCAGTCCTCATGATCGGACAAGCACCTTGCGTTTTCTAGCAGCGTCCGGGATTCTCCTTCAACCTCAAGGGCTGATATGAATAAAGTAGCGGCGTGGTCAGAGGACGAGGTCTCGCTCTGGCTGACCGATCAGGGTTTGCAGGAGTACTCGGAAGCACTGCGAAAATATGACGGACTGGCTTTATTAAATCTTACAACAGAAGACTTCAAGAGGACTCCTCTCTCTAGAGTCACTTCAGACGGCGGTCGTCTACTATTGGAAAAGATCGAGACTCTTAAGATCGAGCATCACATGAATGGACACACCAATGGGCACATGGTGTTGAATCAAAACGGCAATGTCGGAAGTAGCGTCAAGGCTCAACGGAACGGCATGGCGAATGGCTTCCACAAGGAACTGGTGCAGATTCCCATGCCGGAGCCGGTTTCTCCACAGTTTCCTCCTGAATGGGGAAAGACCGCCGTGGCTCTGGTTTACGCCTTATGCTGCTTCGTGTTCACCACCGTTGTTATTTCTGTGGTTCACGAACGCGTGCCTCCTAAGGAAGAGACTCCGCCGCTCCCCGACAAGTTCTTTGACTTTTTTGGCAGGGTGGAGTGGGCTTTCACTGTGTGCGAGATCAACGGGATGGTCCTGATCGTCTTGTGGATTATACAGTGGAGTCTCTTAAAACACAAATCAATCGTTGCTCGACGCTTCTGTTTCATAGTCGGGACGCTCTACCTCTACCGGTGCATCACCATGTACATTACTACTCTTCCCGTGCCTGGCATGCACTTCAAATGCTCTCCTAAGgtgAATGGAGACTGGCAGTCTCAGATGCGGCGGGTGATGAAGTTGATCGCAGGAGGAGGTCTGACCATCACCGGCTCTCATAACATGTGCGGAGACTACTTATACAGCGGCCATACAGTCATGCTGACCCTCACCTATCTCTTCATCAAGGAGTATTCTCCCAGAAGGTTCTGGTGGTTTCACTGGGGCTGCTGGTCTTTGTGTGCGGTCGGAGTGTTCTGCATCCTCCTGGCTCATGACCATTACACCATTGACGTTGTCGTGGCCTACTTCATCACCACACGCCTTTTCTGGTGGTATCACACTATGGCCAACCAACAAGTGCTCAAAGAAACATCACAAAGCAACTTCTTCGCCAATGTGTGGTGGTATCGATTTTTCCAGTACCTAGAAAGCAATGTTCCTGCCGTTGTTCCACGTCACTACCAGAAACCCTTTTCATGGCGATTGCTGCACTGGAGCCATGTCAAATACACACGGATAGACTCCGATTGACTAGCTTTCTCATTGGAAAAAAACTCACCCGAAGTGCCAGAACAAGACTGAAATTGTTACTAATCCCTTTAGTTATCAAACTACTCATTCAAAACGTCTCGTTTCCTTGCGCAGGATAGAGTTTTTGATGTAAACTTACCAAGTTTGTGGCGGAGAACAATAAATTACGGTTAGTGATgagcgtcttttttttttttttgtcgtagCATTACACGCAAAACGTTtgtccttttgttttgttttttgaataaaTTGGTAATGTAGCCAAGTATCTTCGCCCCCGtttacagccacaaagccatctTTTCAAGATATCAAACAAGCAATTTATTGATCTCTTTGCTAGAAATGAGAATCAGTTTTGTACAGACTTCGATTTTTCTAGATAACACTTGCTTTCAGATGAtttatatggacataattttattttttgaactaATTCTTTACTTCGAGAGCTACAGATGACGTATATCGTTCGGATGATCGAATGCTCCACAGTGCCTTAACGATTTCAGAGCAAACTCTTGCTCGTTTGTATTTATGTTCGTTCACAGACTATTTCAGTGTTTCGCATTTTTCTGCGACTCATGCGAGATGTTTTACCTCGTCGCCTGAATGTTATTTCACGAGAGTGTCCGCAAAGCTAATTCCATCGTCTGTTATCATTTCTAATtgtttttgaatatatttattaatgtctTCGTTGCGTTATGTTTAGTGTTTTCCTCTGGGATCTTGTTTTGCACAGTTGTTTAAGTCGGACGACAGGTGTTTTATGGTGTTGAATTCCAGGTTTCTGTTGGACTGACAAGACGATGTGATTTATCATTTCCATGAGCGAATCAGAGGATCTGTCCTATTGACCACCCAATACAACAAGCTGCTATATTGTCATTAAAAGTAGGAGGTTTTCTGATGTCTgttgacaaacaaataaattacaaatattagtACACA
>TCONS_00008998
CTGGAATTCTTCAGTCGGCCGATGCATGTGGTCCTGATCACTGCGTTTCTGCTTCAGCTCGTGCCGGTTCTTAGTAATATATGGGCTTTTTTGGAAAAAGATTAAATGCAGCTGAAGGATATATAGCCATGTTGGCCATGTGGCTGCGATGTTGCGTAGTTTGAAAAAGTTTCTTTTGAGGAGTTTATACTATGACTAAGTTATCATCAACTCAGGAGGAAAGCAAAACCTGTCAGACATCTCTGAAGAGGTTGTAGGAGTGATCTGGAATTTGTAAGCCAGTCCTCATGATCGGACAAGCACCTTGCGTTTTCTAGCAGCGTCCGGGATTCTCCTTCAACCTCAAGGGCTGATATGAATAAAGTAGCGGCGTGGTCAGAGGACGAGGTCTCGCTCTGGCTGACCGATCAGGGTTTGCAGGAGTACTCGGAAGCACTGCGAAAATATGACGGACTGGCTTTATTAAATCTTACAACAGAAGACTTCAAGAGGACTCCTCTCTCTAGAGTCACTTCAGACGGCGGTCGTCTACTATTGGAAAAGATCGAGACTCTTAAGATCGAGCATCACATGAATGGACACACCAATGGGCACATGGTGTTGAATCAAAACGGCAATGTCGGAAGTAGCGTCAAGGCTCAACGGAACGGCATGGCGAATGGCTTCCACAAGGAACTGGTGCAGATTCCCATG
>TCONS_00008999
ATGAATAAAGTAGCGGCGTGGTCAGAGGACGAGGTCTCGCTCTGGCTGACCGATCAGGGTTTGCAGGAGTACTCGGAAGCACTGCGAAAATATGACGGACTGGCTTTATTAAATCTTACAACAGAAGACTTCAAGAGGACTCCTCTCTCTAGAGTCACTTCAGACGGCGGTCGTCTACTATTGGAAAAGATCGAGACTCTTAAGATCGAGCATCACATGAATGGACACACCAATGGGCACATGGTGTTGAATCAAAACGGCAATGTCGGAAGTAGCGTCAAGGCTCAACGGAACGGCATGGCGAATGGCTTCCACAAGGAACTGGTGCAGATTCCCATGCCGGAGCCGGTTTCTCCACAGTTTCCTCCTGAATGGGGAAAGACCGCCGTGGCTCTGGTTTACGCCTTATGCTGCTTCGTGTTCACCACCGTTGTTATTTCTGTGGTTCACGAACGCGTGCCTCCTAAGGAAGAGACTCCGCCGCTCCCCGACAAGTTCTTTGACTTTTTTGGCAGGGTGGAGTGGGCTTTCACTGTGTGCGAGATCAACGGGATGGTCCTGATCGTCTTGTGGATTATACAGTGGAGTCTCTTAAAACACAAATCAATCGTTGCTCGACGCTTCTGTTTCATAGTCGGGACGCTCTACCTCTACCGGTGCATCACCATGTACATTACTACTCTTCCCGTGCCTGGCATGCACTTCAAATGCTCTCCTAAGgtgAATGGAGACTGGCAGTCTCAGATGCGGCGGGTGATGAAGTTGATCGCAGGAGGAGGTCTGACCATCACCGGCTCTCATAACATGTGCGGAGACTACTTATACAGCGGCCATACAGTCATGCTGACCCTCACCTATCTCTTCATCAAGGAGTATTCTCCCAGAAGGTTCTGGTGGTTTCACTGGGGCTGCTGGTCTTTGTGTGCGGTCGGAGTGTTCTGCATCCTCCTGGCTCATGACCATTACACCATTGACGTTGTCGTGGCCTACTTCATCACCACACGCCTTTTCTGGTGGTATCACACTATGGCCAACCAACAAGTGCTCAAAGAAACATCACAAAGCAACTTCTTCGCCAATGTGTGGTGGTATCGATTTTTCCAGTACCTAGAAAGCAATGTTCCTGCCGTTGTTCCACGTCACTACCAGAAACCCTTTTCATGGCGATTGCTGCACTGGAGCCATGTCAAATACACACGGATAGACTCCGATTGACTAG

Function

symbol description
sgms1 Enables ceramide cholinephosphotransferase activity; ceramide phosphoethanolamine synthase activity; and sphingomyelin synthase activity. Involved in sphingomyelin biosynthetic process. Acts upstream of or within ceramide biosynthetic process. Located in Golgi trans cisterna. Is integral component of Golgi membrane.

GO:

id name namespace
GO:0046513 ceramide biosynthetic process biological_process
GO:0030148 sphingolipid biosynthetic process biological_process
GO:0006686 sphingomyelin biosynthetic process biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0033188 sphingomyelin synthase activity molecular_function
GO:0047493 ceramide cholinephosphotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-295 Predicted to enable ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin biosynthetic process. Predicted to act upstream of or within sphingolipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane; integral component of endoplasmic reticulum membrane; and integral component of plasma membrane. Orthologous to human SGMS1 (sphingomyelin synthase 1).

Ensembl:

ensembl_id ENSDARG00000029621

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008997 False 2522 mRNA 0.45 6 6065661 6114296
TCONS_00008998 False 693 mRNA 0.47 2 6098713 6102809
TCONS_00008999 True 1219 mRNA 0.50 5 6102471 6113343

Neighbor

gene id symbol gene type direction distance location
XLOC_004509 g6pca.2 coding upstream 17375 6041575 ~ 6048286 (+)
XLOC_004508 si:ch211-131k2.3 coding upstream 58796 6002715 ~ 6006865 (+)
XLOC_004507 si:ch211-131k2.2 coding upstream 84084 5977777 ~ 5981577 (+)
XLOC_004506 LO017821.1 coding upstream 255382 5775853 ~ 5810279 (+)
XLOC_004505 dlx3b coding upstream 353741 5708400 ~ 5711920 (+)
XLOC_004511 asah2 coding downstream 3386 6117682 ~ 6142673 (+)
XLOC_004512 NA coding downstream 30409 6144705 ~ 6152579 (+)
XLOC_004513 NA coding downstream 34711 6149007 ~ 6153121 (+)
XLOC_004514 NA coding downstream 42667 6156963 ~ 6171928 (+)
XLOC_004515 NA coding downstream 80874 6195170 ~ 6451609 (+)
XLOC_004497 AL929469.3 non-coding upstream 975731 5089815 ~ 5089930 (+)
XLOC_004495 AL929469.1 non-coding upstream 1003964 5061567 ~ 5061697 (+)
XLOC_004494 AL929469.2 non-coding upstream 1008305 5057221 ~ 5057356 (+)
XLOC_004493 AL929469.4 non-coding upstream 1013083 5052443 ~ 5052578 (+)
XLOC_004492 AL929469.5 non-coding upstream 1013964 5051562 ~ 5051697 (+)
XLOC_004517 CU184911.1 non-coding downstream 593833 6708129 ~ 6708243 (+)

Expression


Co-expression Network