XLOC_004512


Basic Information

Item Value
gene id XLOC_004512
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6144705 ~ 6152579 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010881
cttttttggGTCATTTTAATTTCTACAGAAATTAAATGACACAAAAACAGTAATCAGAAACTAgtgctttatttgtttttcaaatgaatAAGAAGTTGTGGCACTTGTGACGGGGCAGATTTCGTTGGAACGGCCCATTCTATGTGACAAAAACAGCAGTCAAAGTTTTGGAGCTGGACTGGCTGAAGGCTGGTCAAAAGAGCACTGTAGTTTGCCAGTGATGCAGTCATATTTAACTGGCCGATGCTTGGGCTTTAAAACTCCGTCAGCTGTTGGAGAGCTGGAATGAAGCAGAGTTGGCCACAAAAAAATCCATGATTAAAGTAATATTTCAAAACCATCTTAATTAAAAcctaatgaattattatttaccATATTCAATTATCTGTAAGCAGTGACTAGGCTTCCTTAGCTGTTGTCATTTGAAGAGACCTAAACAGAAGCCTTTGATGCACAACAAGAAACAGAGAAGATACATATTATCAATTGATTACAAGGATTTGCACAATGACCGTTTAATAGATGCTAAACAAATTTGTAACACTCAGATTATGCAGTAATTGAATTTGTGGTGAATTTACCTTATTAATTTATCAGTCTGCGTTGACCTTTCTTGCCCGATGCCAGTGAGGTGACTCTAACAGCAGGACAGATGCACAACAAGAAACGGATATTAGCGATTGATTAGaaggacacacacaaacacacacacacacaggatgagAATTAAAATGAAGTTTAACAATCAGATTATGTGGGATCTAAATTTACCTTGGTAGTTTATCGGTGTGCAGTGACTGACTTTTCCAGCTCGTTGTCATTGAGGTGACTCAAAAAGCAGCACAGATGCACATTAAGAAAAGGAGAA
>TCONS_00010882
cttttttggGTCATTTTAATTTCTACAGAAATTAAATGACACAAAAACAGTAATCAGAAACTAgtgctttatttgtttttcaaatgaatAAGAAGTTGTGGCACTTGTGACGGGGCAGATTTCGTTGGAACGGCCCATTCTATGTGACAAAAACAGCAGTCAAAGTTTTGGAGCTGGACTGGCTGAAGGCTGGTCAAAAGAGCACTGTAGTTTGCCAGTGATGCAGTCATATTTAACTGGCCGATGCTTGGGCTTTAAAACTCCGTCAGCTGTTGGAGAGCTGGAATGAAGCAGAGTTGGCCACAAAAAAATCCATGATTAAAGTAATATTTCAAAACCATCTTAATTAAAAcctaatgaattattatttaccATATTCAATTATCTGTAAGCAGTGACTAGGCTTCCTTAGCTGTTGTCATTTGAAGAGACCTAAACAGAAGCCTTTGATGCACAACAAGAAACAGAGAAGATACATATTATCAATTGATTACAAGGATTTGCACAATGACCGTTTAATAGATGCTAAACAAATTTGTAACACTCAGATTATGCAGTAATTGAATTTGTGGTGAATTTACCTTATTAATTTATCAGTCTGCGTTGACCTTTCTTGCCCGATGCCAGTGAGGTGACTCTAACAGCAGGACAGATGCACAACAAGAAACGGATATTAGCGATTGATTAGaaggacacacacaaacacacacacacacaggatgagAATTAAAATGAAGTTTAACAATCAGATTATGTGGGATCTAAATTTACCTTGGTAGTTTATCGGTGTGCAGTGACTGACTTTTCCAGCTCGTTGTCATTGAGGTGACTCAAAAAGCAGCACAGATGCACATTAAG

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process biological_process
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process biological_process
GO:0006558 L-phenylalanine metabolic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0004175 endopeptidase activity molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0071916 dipeptide transmembrane transporter activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010881 False 868 lncRNA 0.37 2 6144705 6145821
TCONS_00010882 True 858 lncRNA 0.38 2 6144705 6152579

Neighbor

gene id symbol gene type direction distance location
XLOC_004511 asah2 coding upstream 2032 6117682 ~ 6142673 (+)
XLOC_004510 sgms1 coding upstream 30409 6065661 ~ 6114296 (+)
XLOC_004509 g6pca.2 coding upstream 96419 6041575 ~ 6048286 (+)
XLOC_004508 si:ch211-131k2.3 coding upstream 137840 6002715 ~ 6006865 (+)
XLOC_004507 si:ch211-131k2.2 coding upstream 163128 5977777 ~ 5981577 (+)
XLOC_004514 NA coding downstream 4384 6156963 ~ 6171928 (+)
XLOC_004515 NA coding downstream 42591 6195170 ~ 6451609 (+)
XLOC_004516 dkk1b coding downstream 312978 6465557 ~ 6467675 (+)
XLOC_004517 CU184911.1 coding downstream 555550 6708129 ~ 6708243 (+)
XLOC_004518 tfam coding downstream 1101533 7254112 ~ 7263958 (+)
XLOC_004497 AL929469.3 non-coding upstream 1054775 5089815 ~ 5089930 (+)
XLOC_004495 AL929469.1 non-coding upstream 1083008 5061567 ~ 5061697 (+)
XLOC_004494 AL929469.2 non-coding upstream 1087349 5057221 ~ 5057356 (+)
XLOC_004493 AL929469.4 non-coding upstream 1092127 5052443 ~ 5052578 (+)
XLOC_004492 AL929469.5 non-coding upstream 1093008 5051562 ~ 5051697 (+)
XLOC_004520 FP102277.2 non-coding downstream 1267453 7420032 ~ 7420148 (+)
XLOC_004522 FQ311940.1 non-coding downstream 1408486 7561065 ~ 7561202 (+)

Expression


Co-expression Network