XLOC_004529 (arid5b)


Basic Information

Item Value
gene id XLOC_004529
gene name arid5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 8168272 ~ 8385702 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009024
GCCGTGTCAGAGAAGGTGATCGTGAAGTTGGAGGATCTGGTAAAATGGATGGTGTCAGATTTGCGGAGCTGGAAGAAGGGTCTTCAGGCCGTCCCGCTGAAGCCCGGTGTGCTGAAGGAGCTGGGCAAGAATGGCCAGCGAGAAGCCCTCCACAAATACAGAGAGTCAACGCTCAACAGCGGACTCAACTTCAAGGACGTCCTCAAAGAGAAGGCTGAACTCGGTGAAGATGCGGATGACAAGAAGGTTCTGGTATTGAGTTACCCTCAGTATTGTCGGTATCGCTCCATCATTGCCCGGCTCCGGGAACGGCCGTCGTCTCTGCTGACCGACCATGTGGTACTGGCCCTGGGAGGAATCGCATCCCTCACCAACAGCACCCAGATCCTGTACTGCAGGGACACGTTTGAACACCCCACGCTGGTGGAGAACGAGAGTGTGTGCGATGAGTTCGCACCCAATCTGAAGGGTCGACCCCGGAAGAAGAAGCTCTCCATCTCTCAGCGCAGAGACTCACAGAGCGGCGGTGCCAGAGAGAGCAACGGTGTGGAGGGCAAGACTCTTGTCAAGATGAGAGCGGACTCGAAATCAGGAGTATCGAAGCCCAGAAACCCCAGCACTGGCAGTTGTAAACGAGTGCAGTCCGAGAACAAACCCAAGGGGGACGGGGGAGATGAGTGCCGGACAGATGAGCAGGCCTTCCTGGTGGCACTCTATAAATACATGAAGGAGAGGAAAACTCCAATCGAGAGGATACCATACCTGGGCTTTAAACAGATAAACCTTTGGACAATGTTTCAAGCGGCCCAGAAACTTGGAGGATATGAGGTGATCACAGCACGCCGACAGTGGAAAAATGTATATGATGAGCTGGGCGGCAACCCGGGAAGCACCAGCGCCGCCACGTGCACACGAAGACACTACGAGAGGCTCATCTTGCCCTACGAGAGATTCACTAAAGGAGAAGAGGACAAACCTCTTCCACCCGCCAAACCTCGCAAACAGGAGGGCAGCGTGCAGGAGAGCATCATCAAAGCCAAGATGATGCCTATCAAGCGGCCTAAGGATGAACAAAAAACACCTCGCGGCGACAAGGACGCATCAGCTAAAGTCCTAGAGCTGGGGATGGAGGACATGGAAGAGCTCCAGGAGAAGCAGAACAGTCAGCAGTTGCAGGCTCCCACCCAAACAGACAGAGATCCAAATAGTCCACTTACTGAAGATGATGAAGGTGTACTAGTGATCAAGGACGAAGATCAACCTGTGCTCCATAACGCTTATGAGCATGCAAATGGGGGTTTGTTGCCCTCGCTTCCACAGGATGGTGCGCAACTCAAATCAGAGGACTGTGATGCGTTTCCTGTTGCTGCTGTGCCACTGCATCATGGTCATCCTCTTCCCAACTCTCACACCTCGGACCAATGGAAGCATGGGATATTGGAATACAAGGTACCTCCTAGTGCCCTTGCAAACGTTGAACAATCTAGGCCAAAAGAAGGCCAAAACCAAGTGGTAATGGTGCTACCCACCCTACAACAGAAACCAGTCACATCTCCAGAAATCCCACCTGAAAGGGTGGAGCCCCTTAAAAAAGAAGAATCCTGCTTTAATTTTAATCCCCTCCTTTACCCCAGAGGGAATCCTGGCATCATGTCCCCATTAGCTAAGAAGAAGATGCTTTCCCAAGTAAGTGGAACAGGACTGCTGAATAATTACCCCTATGGACCACCACCTCCATTAGTCAGTAGAAGATTGTCCAGCAGTGGTACAGAAGTGTCATCTGCTGGACAGTCGAGCTCCCAGGTTTCCTCCTCCGTAGAGACCAGCATAGTGATCAAACGACCGTCAGTGATCCAGCATGCTCAGAGTTTCAAGTCCAGGGGTAGTGAGGACAGGAGGTCTTCAACAGAGGGCTCTCAGAAAGATGGGTGTAGTGAGGGAGAACCAGTGCACCATTCACAGACCCTAATAAGAGAGCCATACCTTAAGCGGGTCGATCCCCATTCCAGCATGGAAAAATCAGCTGAGATGCCTCGCCCTGGCCAGGCTCCCAGCTTCCTGAGTGAATTTTATTCCTCACCACACTTACACAATCTCTGCCGACAAACCGAGCACCACCTAAGCAAGGAACAGATAAGCAAGTATCTAAGTAGGGATGTTTACACTCGGGACTCAGAGACTGCCCAGGGATTTCCCCCAAGCCAGCATCCTGACAATGTGGGCTTGAATTTCTCTGCCCGGCTTAGTCAGAAAGAAAAGGGACCTCCTCCAGAAAGGGTGACAGAGGAGCAACCAACTGATCTAAGTCTCCCAAAATCCTCTCCTCTTAAACTGCCTCTTTCCACATCCACCCTGGGTGGCATTCCACATGCCGCAATTCAGCAGGACATTAAAAACTCTCCTCACTTTCAAGCAGGCAACAGTCAGAGCTCAAGTGTAGATTACCATCCAAGGGCTTGCCGTGTTCCTCCCATGACTGTCTCCGCATCTAAAAAGAAAACACCCAATAGTAGAGGAGAAGAGTCGATGGGATTCAAGATCGATGAGATGTCCCGGCCTATTCTaagcaccaaaagcagcccaCAGAATATCTGCACTGCAAGACCACTCAAAAGAAACATTGAGGATTTGGAGAATGGACCAACGGAGAAGAAGATCCGGGCCGTGACGCCCTTGCACTGCTCGACACAAAGAGATCTCCCAGGGAAACCAAGGACACCGGAAGCTGACAGCGAATCTGTGAAGCCTGCAGAACCTGCAGTGCACATCAACAGTTACACTTCAGAGGGCCACAAGATCCCCTTGCACTCCCACCTTTTCCAAGGGCTGTATCCAGGGACTTTTGTATCTCAGGTCCAGGACATGTGCGAAAGCTTGGGCTCCCATGTCACGCCAAGTTACTCCCATCCACTGCAGTACTTGAAGAACCAGGCTGTTCTGTCACCGCTCATGCCCCCCTTCGCCATTCATTCCTTAATGATGCAAAGACAATTCTTGGCCGCCAACCCAGCTCACATGTACAGGCACCAAGTGGGCACCTCATACGGGGACATTCTGCACCCTGGCCTCTACCCCATGTCTGCTCTTCACCCCCAACCAGCTTTCAGTCCCCCTCAACTCTCTTCAGTGCACCCCAGCACTAAACTTTCCTAG
>TCONS_00009025
GCTCATCTTGCCCTACGAGAGATTCACTAAAGGAGAAGAGGACAAACCTCTTCCACCCGCCAAACCTCGCAAACAGGAGGGCAGCGTGCAGGAGAGCATCATCAAAGCCAAGATGATGCCTATCAAGCGGCCTAAGGATGAACAAAAAACACCTCGCGGCGACAAGGACGCATCAGCTAAAGTCCTAGAGCTGGGGATGGAGGACATGGAAGAGCTCCAGGAGAAGCAGAACAGTCAGCAGTTGCAGGCTCCCACCCAAACAGACAGAGATCCAAATAGTCCACTTACTGAAGATGATGAAGGTGTACTAGTGATCAAGGACGAAGATCAACCTGTGCTCCATAACGCTTATGAGCATGCAAATGGGGGTTTGTTGCCCTCGCTTCCACAGGATGGTGCGCAACTCAAATCAGAGGACTGTGATGCGTTTCCTGTTGCTGCTGTGCCACTGCATCATGGTCATCCTCTTCCCAACTCTCACACCTCGGACCAATGGAAGCATGGGATATTGGAATACAAGGTACCTCCTAGTGCCCTTGCAAACGTTGAACAATCTAGGCCAAAAGAAGGCCAAAACCAAGTGGTAATGGTGCTACCCACCCTACAACAGAAACCAGTCACATCTCCAGAAATCCCACCTGAAAGGGTGGAGCCCCTTAAAAAAGAAGAATCCTGCTTTAATTTTAATCCCCTCCTTTACCCCAGAGGGAATCCTGGCATCATGTCCCCATTAGCTAAGAAGAAGATGCTTTCCCAAGTAAGTGGAACAGGACTGCTGAATAATTACCCCTATGGACCACCACCTCCATTAGTCAGTAGAAGATTGTCCAGCAGTGGTACAGAAGTGTCATCTGCTGGACAGTCGAGCTCCCAGGTTTCCTCCTCCGTAGAGACCAGCATAGTGATCAAACGACCGTCAGTGATCCAGCATGCTCAGAGTTTCAAGTCCAGGGGTAGTGAGGACAGGAGGTCTTCAACAGAGGGCTCTCAGAAAGATGGGTGTAGTGAGGGAGAACCAGTGCACCATTCACAGACCCTAATAAGAGAGCCATACCTTAAGCGGGTCGATCCCCATTCCAGCATGGAAAAATCAGCTGAGATGCCTCGCCCTGGCCAGGCTCCCAGCTTCCTGAGTGAATTTTATTCCTCACCACACTTACACAATCTCTGCCGACAAACCGAGCACCACCTAAGCAAGGAACAGATAAGCAAGTATCTAAGTAGGGATGTTTACACTCGGGACTCAGAGACTGCCCAGGGATTTCCCCCAAGCCAGCATCCTGACAATGTGGGCTTGAATTTCTCTGCCCGGCTTAGTCAGAAAGAAAAGGGACCTCCTCCAGAAAGGGTGACAGAGGAGCAACCAACTGATCTAAGTCTCCCAAAATCCTCTCCTCTTAAACTGCCTCTTTCCACATCCACCCTGGGTGGCATTCCACATGCCGCAATTCAGCAGGACATTAAAAACTCTCCTCACTTTCAAGCAGGCAACAGTCAGAGCTCAAGTGTAGATTACCATCCAAGGGCTTGCCGTGTTCCTCCCATGACTGTCTCCGCATCTAAAAAGGTAACAGAATCTCATTCAAAGGTTCTGGAGAAAACACCCAATAGTAGAGGAGAAGAGTCGATGGGATTCAAGATCGATGAGATGTCCCGGCCTATTCTaagcaccaaaagcagcccaCAGAATATCTGCACTGCAAGACCACTCAAAAGAAACATTGAGGATTTGGAGAATGGACCAACGGAGAAGAAGATCCGGGCCGTGACGCCCTTGCACTGCTCGACACAAAGAGATCTCCCAGGGAAACCAAGGACACCGGAAGCTGACAGCGAATCTGTGAAGCCTGCAGAACCTGCAGTGCACATCAACAGTTACACTTCAGAGGGCCACAAGATCCCCTTGCACTCCCACCTTTTCCAAGGGCTGTATCCAGGGACTTTTGTATCTCAGGTCCAGGACATGTGCGAAAGCTTGGGCTCCCATGTCACGCCAAGTTACTCCCATCCACTGCAGTACTTGAAGAACCAGGCTGTTCTGTCACCGCTCATGCCCCCCTTCGCCATTCATTCCTTAATGATGCAAAGACAATTCTTGGCCGCCAACCCAGCTCACATGTACAGGCACCAAGTGGGCACCTCATACGGGGACATTCTGCACCCTGGCCTCTACCCCATGTCTGCTCTTCACCCCCAACCAGCTTTCAGTCCCCCTCAACTCTCTTCAGTGCACCCCAGCACTAAACTTTCCTAGGTGAAGTAGTCTGGTATTTCCAAGCCGGATGTGCTTAACTCAGACCTAATGCTCCCTAGAAGATCCCATCAAGCATGGTCAACACTATGTATCCAACGAATAGCAGTGTTTTGTAGACGCTTTGACAAGGGAGCAGTTATTTACCTTCTTGCCACTAAAGTTTATGATTTGCACATTTCTTTGAACAGGGGCCAACTGGGCTAATTGTGGCTTGTTCTCACCGCACTGTTTGATAGTGTCAGCTGTCTTGTTCGAAAACATGTTGCCTTGGCACAGGTGCCCTAGTAGAGATGGGCATGATGTCCATGGAGGCATCCAAAGGAAAGTCGAGTGACAAATCAGTGCAATTTCAATCCATTCTGAGAGCTCTTTTGTCTGAAACACTATGATACGAAAACGCAAGAGCTGCCTGGGTAACTGTCGGACCTTTTCACATTACTCTTGActgtactttttttgttgttgctgttgttgttatttttattttttttttaaagtgtaacagTGTGGTAGTTTTCTATGTTTATTTTTCAATCCTACAAGGGTTAAGCAATGAGATATCACATTTGATAAAGACGCAAAAAACAGACCTGACTGCAGTTTGTTGTGCTACACGGTTACATGTAAATAAGACTAACTGAGCTTTCCTTGAAGGAATCTAAAACGTCAGTGATACAATGTGAAGTAGGCTTCACAAGCTTCTTtgaccaccaccaccaccactgtCTGCTGGCCTCCTTTCACGCCCGGCCAAACCCTCTCCTGTCTGCTAGAGCAATGTGGAATGTGTTTGTCAAATGTAGGACTGAGGTGCTTGTACATTACCTTCACAAACTGAACGCAATTTTGTATCATGTTCACTCGCTACTGTAATTTCTGACTGCTCTGAATTGCGGGGCTTGAGAGCGTTTTTTGGACGGTGAGAGGATAAAAAGCAGAACTACTTAAGAGTCAGAAAGTGAGTTTTGTATTTGCTGGTGTTCACTTGTGATCGCTTACTCAGAGGACTTTTTATCAGGACATACAACTGAAATGTAAAACTACATTTGGgggaaaacacattttttgagcacTTAGTTAAGCACACAGGCTTTTCCATCAGTTTAAGGATAGCTAACAGTTATAATTTGTCTTAGATATTGTTTGAATTTTAAGTCTGTAAGTGCCGGCAGCAGTTAAATTCGCGTCTGTATTAAATGAAGTGTAACACTTTTCCAGAAAAGACTTTTTCATTAACAAAAAGCATGATTTCTTTGCACAAAAGATGTTGGGAAAGTACCAAGACAATTTGAAAAGCAACACAGTACTCCTAGGGGTAatcaattatatttttctttttctttttttttttcc

Function

symbol description
arid5b Predicted to enable transcription cis-regulatory region binding activity and transcription coactivator activity. Predicted to be involved in adipose tissue development; positive regulation of DNA-binding transcription factor activity; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ARID5B (AT-rich interaction domain 5B).

GO:

id name namespace
GO:0060612 adipose tissue development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-272 Predicted to enable transcription cis-regulatory region binding activity and transcription coactivator activity. Predicted to be involved in adipose tissue development; positive regulation of DNA-binding transcription factor activity; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ARID5B (AT-rich interaction domain 5B).

Ensembl:

ensembl_id ENSDARG00000037196

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009024 False 3153 mRNA 0.52 9 8168272 8384349
TCONS_00009025 True 3607 mRNA 0.46 2 8373525 8385702

Neighbor

gene id symbol gene type direction distance location
XLOC_004528 cabcoco1 coding upstream 63769 8074343 ~ 8104503 (+)
XLOC_004527 NA coding upstream 121806 8043521 ~ 8046466 (+)
XLOC_004526 rhobtb1 coding upstream 129177 8003872 ~ 8039095 (+)
XLOC_004525 BX548028.1 coding upstream 297481 7865470 ~ 7870791 (+)
XLOC_004524 NA coding upstream 327259 7799801 ~ 7841013 (+)
XLOC_004530 adoa coding downstream 89166 8474868 ~ 8476513 (+)
XLOC_004531 NA coding downstream 91745 8477447 ~ 8480465 (+)
XLOC_004532 NA coding downstream 141866 8527568 ~ 8534915 (+)
XLOC_004533 NA coding downstream 170934 8556636 ~ 8557159 (+)
XLOC_004534 nrbf2b coding downstream 183983 8569685 ~ 8579727 (+)
XLOC_004523 CABZ01050061.1 non-coding upstream 435622 7732534 ~ 7732650 (+)
XLOC_004522 FQ311940.1 non-coding upstream 607070 7561065 ~ 7561202 (+)
XLOC_004520 FP102277.2 non-coding upstream 748124 7420032 ~ 7420148 (+)
XLOC_004536 NA non-coding downstream 582615 8968317 ~ 8971032 (+)
XLOC_004542 NA non-coding downstream 1058019 9443721 ~ 9449731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_01175229_01292056 ARID5B coding CI01000047 null 1174588 ~ 1292056 (-)