XLOC_004537 (tubgcp2)


Basic Information

Item Value
gene id XLOC_004537
gene name tubgcp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9183626 ~ 9218258 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009030
GTTTCTGACTTCCTGTTATTGTGGCGTTGTCAGTTTCGCCACTCTTCTACAACAGATGCTTTACGTTTTCATTAAGACGAAATAATACGGTTTTTACAAGCTTCTGATATCATGAGTGAATTCAGGATTCATCATGATGTTAATGAACTCCTCGGGCTCCTTAATGTCCGAGGGGGAGATGGTGCAGAGGTTTATATTGATTTACTGCAGAAGAACAGGACTGGATATGTGACCACTACAGTTTCTGCACACAGCGCTAAGGTCAAAATGGCAGAACACTCCAAAACACCTGAAGACTTCTTGAGGAAATATGATGAACTGAAGTCAAAGAATGCTCGCAACCTTGATCCACTGGTGTATCTGCTCTCCAAACTCACTGAAGATAAAGAGACTTTAAAGTTCCTGCAGCAGAATTCCAAGGAGAGATCAGAAATGTCTGCCAATGCAGCATCCAGCACCACTGCATCATATAGCATTCCTGCAACCAGCAGCAAAATGTCCATGCAAGAACTGGAGGAATTGCGCAAAAAGCTGGGAAATGTCACAGCCAGTTCCAATGTACCACAGTCTTCTGAGGTCATCCGTAAAATGCTGAGAGACCGTCATAACAAGAAGAACCCCACTCAGCCCAACCCTGTGTTTCCAAACTGGGTGTATGACCGGCCTTCTCTGATTGGGGATTTCATCACTAACCCCACCCCTGTCGGAGATCCTGTTGTGGCTATTGGCACAATGCCGCTGGCTGCACAGGAACAAGCTCTGGTTGAGGATCTGCTGTATGTTCTGATTGGTGTGGATGGGAGAGACATCACAGCTCAGCCAGTGCTTGGCAGACAGAGCCGATCGTTCATTGTAGATCCTTCTCTCGATTTGTCCGTCAAAGAGCTGGTCAACAGGATATTACCAGTCGCATCTTGTTACTCCACCATCACCCGTTTCACTGAGGAGAAGTCGTCATTTGAGTATGGTCAGGTGAATCACGCTCTGACTGCAGCCATGAGGACTCTGATGAAAGAATATCTGATCCTGGTGACGCAGCTGGAGCATCTGCACAGACAGGGCACGCTTTCCCTGCAGAAGCTCTGGTTCTACATACAGCCCACCATGCGCACCATGGAAATCCTGGCCTCCATTGCCACTTCCGTTGAAAAGGGTGAGTGTATGGGTGGCTCGACCCTCAGCCTGCTTCATGATCGCACTTTCAATTACACCGGAGACAGCCAGGCTCAAGAGCTCTGCCTCTATCTGACCAAAGCAGCCAGTGTTCCCTACTTTGAAATACTCGAGAAGTGGATCTATAGGGGCATCATTAAAGATCCGTACAGTGAATTCATGGTTGAGGAACATGAGCTGCAGAAAGAGAAGATTCAGGAGGATTATAATGACAAATACTGGGATCAAAGATACACTATCGTCCAGCACAGAATCCCATCATTCCTTCAGAAGATGGCAGATAAGATATTAAACACGGGCAAGTATCTGAATGTTGTGCGAGAGTGCGGTCGTGATGTAACCTGTCCAGACGCCAAAGAGGTTCTCTACACGCTTAAAGAGAGAGCGTATGTGGAGCAGATCGAAAAAGCATATTACTATGCCAGTAAGGTTCTGCTTGACTTCCTGATGGAGGAAAAGGAGCTTGTTTCACGCTTGAGGTCAATCAAACATTACTTTTTAATGGATAAAGGAGacttttttgtgcattttatgGACCTGACGGAGGAGGAACTGAAGAAGCCGGTTGATGACATCATTCCTCCACGACTGGAAGCTCTGCTGGAGCTGGCCTTGAGGATGAGCACTGCCAACACTGATCCATTCAAAGATGATTTAAAGATTGACCTGATGCCCCATGATGTAATCACTCAGCTGTTACGTGTCCTCGCTATTGATACCAAACAGGAGAAAGCCATAATTAATGCAGAGCCCACAGAGGTGTCACTTAGCGGTCTAGAGGCTTTCTCTTTCGACTACATCGTCAAGTGGCCACTTTCACTCATAATTAACAGGAAAGCCCTGACAAGATACCAGATGCTCTTCAGGCACATGTTTTACTGCAAGCACGTAGAAAGGCTGCTCTGTAATGTGTGGATCAGCAATAAAGCAACTAAGCAATATTCACTGCACACTGCGAAATGGTTTGCTGCTGCCTTTGCATTGAGGCAACGGATGCTTAACTTCGTCCAGAACATTCAGTACTACATGATGTTTGAGGTTATGGAGCCCACATGGCACGTCATGGAGAACAACTTGAAGACTGCGTCCAACATTGATGATGTGCTGTGTCACCACACCAGTTTCCTGGATAACTGTTTGAAAGACTGTATGCTCACCAACCCTGAACTGCTCCGGATCTTCTCCAAGCTCATGTCTGTCTGTGTCATGTTTACCAACTGtatgcagCGGTTCACACAAAGCATGAGGATAGACAGCGAGATGAAGCGTCTGACTCTTGAGCACGGCACTATAGAAGGCACTTCAGTCCTGGCTGACGAGGCCGAGAAAAAAAGACTGGCCTCTAAATTTCTAGCTGAGCATGTGGATGCTCTTCAGTCTGACTCCGGGTTCGAGGGGACCATCAGCAAGTTTGACAGTAACTTCAGCACTTTATTGCTGGATCTTTTGGACAAGCTCAGCATTTACAGCACCAATGactgtgaacacagcatgatCAACATCATCTACAGGCTAGACTTCAATGGCTTTTACACTGAGAGACTGGAGCGCATGGCCATCGAAAGAAGCCAGAAGACGGTAGCGTAGCATTATCTATCAAAATATCCAGCTGTTTTATAGAGTTCTGTGTTGATTTGTTGCCTAATTTCCCCACTTAACTATATGTAATGCTATTATGTGGTGCTGTAACATGAAGCACTTTTCTGTTGGACATGCTTTTAATGGTCATGTATAAATTCCACAAATTCAAACTCAAATAAAAACTCagtataataaagtaataa
>TCONS_00009031
TTAGGTGAAGTATTCCTTTAATCTGATCTGTTTGTCTTCATCTTAGTTTCTAGCTGAGCATGTGGATGCTCTTCAGTCTGACTCCGGGTTCGAGGGGACCATCAGCAAGTTTGACAGTAACTTCAGCACTTTATTGCTGGATCTTTTGGACAAGCTCAGCATTTACAGCACCAATGactgtgaacacagcatgatCAACATCATCTACAGGCTAGACTTCAATGGCTTTTACACTGAGAGACTGGAGCGCATGGCCATCGAAAGAAGCCAGAAGACGGTAGCGTAGCATTATCTATCAAAATATCCAGCTGTTTTATAGAGTTCTGTGTTGATTTGTTGCCTAATTTCCCCACTTAACTATATGTAATGCTATTATGTGGTGCTGTAACATGAAGCACTTTTCTGTTGGACATGCTTTTAATGGTCATGTATAAATTCCACAAATTCAAACTCAAATAAAAACTCagtataataaag

Function

symbol description
tubgcp2 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin small complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Orthologous to human TUBGCP2 (tubulin gamma complex associated protein 2).

GO:

id name namespace
GO:0051415 microtubule nucleation by interphase microtubule organizing center biological_process
GO:0051225 spindle assembly biological_process
GO:0007020 microtubule nucleation biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005813 centrosome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component
GO:0000923 equatorial microtubule organizing center cellular_component
GO:0000930 gamma-tubulin complex cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0008275 gamma-tubulin small complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043015 gamma-tubulin binding molecular_function
GO:0051011 microtubule minus-end binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-031118-150 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin small complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Orthologous to human TUBGCP2 (tubulin gamma complex associated protein 2).

Ensembl:

ensembl_id ENSDARG00000013079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009030 False 2957 mRNA 0.46 18 9183626 9218258
TCONS_00009031 True 477 lncRNA 0.39 2 9213725 9218252

Neighbor

gene id symbol gene type direction distance location
XLOC_004536 NA coding upstream 212594 8968317 ~ 8971032 (+)
XLOC_004535 reep3b coding upstream 301440 8822717 ~ 8882186 (+)
XLOC_004534 nrbf2b coding upstream 603899 8569685 ~ 8579727 (+)
XLOC_004533 NA coding upstream 626467 8556636 ~ 8557159 (+)
XLOC_004532 NA coding upstream 648711 8527568 ~ 8534915 (+)
XLOC_004538 pimr46 coding downstream 31849 9250107 ~ 9252051 (+)
XLOC_004539 taco1 coding downstream 87574 9305832 ~ 9315802 (+)
XLOC_004540 kcnh6b coding downstream 102188 9320446 ~ 9336231 (+)
XLOC_004541 kcnh6b coding downstream 124244 9342502 ~ 9347327 (+)
XLOC_004542 NA coding downstream 225463 9443721 ~ 9449731 (+)
XLOC_004531 NA non-coding upstream 703161 8477447 ~ 8480465 (+)
XLOC_004527 NA non-coding upstream 1137160 8043521 ~ 8046466 (+)
XLOC_004546 NA non-coding downstream 578779 9797037 ~ 9812486 (+)
XLOC_004550 NA non-coding downstream 722875 9941133 ~ 9950489 (+)
XLOC_004556 CU459020.1 non-coding downstream 992674 10210932 ~ 10211048 (+)
XLOC_004565 CR450852.1 non-coding downstream 2425293 11643551 ~ 11643671 (+)

Expression


Co-expression Network