XLOC_004539 (taco1)


Basic Information

Item Value
gene id XLOC_004539
gene name taco1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9305832 ~ 9315802 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009033
GATGACGTTTATGGTGTTGCTATCTCTTGGACTCGTGCGTTAAGAAGTCGCTCTGCTTAATTAAATGACTACAAAATTCTAACATACACATTTAGTTTACTGTCTTTAGTAACGGAACGCGTTATATCAATGAATGTTCTAATCATGACCGCAAAATAGTACCTGAAACTCTCCTGTTAACGCGTGCACGACGCTGGAAGCGTATGATTTTAAAGCAAAGGCAGCATGACATTCTGACCAAAGTCGTTTGCTTTGGAGTCAAACACACAGCTCATGTGCCCGGTGAAAGAAGAGGAATGTTAGTGAACATCATGCTGAGGGCTTTCAGGTTGTCCAGGCGAGCGTCTGCGGTGTTTCAGTGTCCAGTCCTTCACCCATGTAGAGCTCTGCACTCCAGTCCTGTGAGCTGGGCAGGACACAACAAATGGTCCAAAGTGAAGGATATTAAAATACCCAAAGATGCTGCTCGAGCCCGGGTCATTGCTAAGTACACCATGATGATTAGGATTGCAGTCAGAGAGGGAGGACCCAATCCAGAATTAAATGTTGGACTGGCACAAATTCTAGAGCAGTGCCGGAACAAGAATCTGCCCAAAACCACCATTGAAGGAGCACTAAAGGGAGCCAAGTCAAAGCCTGGAGTGCAGTATCTTTACGAGGCCACCGGACCAGGCGGATGCAAAATACTCATCGAGGTTCTGACCGACAACAACATGCGATCCCTTAATGAAGTCAAACGTATCATGACGAAAAATGGTGGGGCGCTACGTGAAGGAGCACGTCGGAACTTTGACAGGAAAGGTGTCGTGGCTGCATCCAGAGACGGGATCTCCTCTGAGAAAGCTCTAGAGCTGGCCATTGAAGCCGGAGCTGAAGATGTGCAGGAGATGGAAGATGAGGAGGACAGACCCATACTACAGTTTATCTGTGACATGACATCCATGAAGGCTGTGCGCAGTGCTTTGGAAAGCTTGGGAGTCCACACTCTCTCTTCTAGTCTAGAGTTTGTGTCTCATACCCCGTCTCTCCTGACCCAGACTCAGCTAGAGACAGCGTCCACCCTGCTGGAAGCTCTCCATGACTGCCCTGATGTGGTCCGGGTATGGGATAACATCCACGCACAGACATAATGTTCAAAAGTCGATTCACAAACTGCAAAATAAGCGTTGATGGACTAATTCATTATGTACATGCCTTAAGAGCCGATTGAAGAAATGGAGCTGTTTGGTCAAATTGAATTGCACATTACCCGGATATATTCTGTGTGATGGAAAAAGGCATGATTGACCATTTTATTGTCACTGCAATAAAGAAGATGTACAGAA

Function

symbol description
taco1 Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human TACO1 (translational activator of cytochrome c oxidase I).

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-070410-35 Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human TACO1 (translational activator of cytochrome c oxidase I).

Ensembl:

ensembl_id ENSDARG00000062943

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009033 True 1325 mRNA 0.46 5 9305832 9315802

Neighbor

gene id symbol gene type direction distance location
XLOC_004538 pimr46 coding upstream 53781 9250107 ~ 9252051 (+)
XLOC_004537 tubgcp2 coding upstream 87574 9183626 ~ 9218258 (+)
XLOC_004536 NA coding upstream 334800 8968317 ~ 8971032 (+)
XLOC_004535 reep3b coding upstream 423646 8822717 ~ 8882186 (+)
XLOC_004534 nrbf2b coding upstream 726105 8569685 ~ 8579727 (+)
XLOC_004540 kcnh6b coding downstream 4644 9320446 ~ 9336231 (+)
XLOC_004541 kcnh6b coding downstream 26700 9342502 ~ 9347327 (+)
XLOC_004542 NA coding downstream 127919 9443721 ~ 9449731 (+)
XLOC_004543 dnajc9 coding downstream 181844 9497646 ~ 9510403 (+)
XLOC_004544 p4ha1a coding downstream 226322 9542124 ~ 9585670 (+)
XLOC_004533 NA non-coding upstream 748673 8556636 ~ 8557159 (+)
XLOC_004532 NA non-coding upstream 770917 8527568 ~ 8534915 (+)
XLOC_004531 NA non-coding upstream 825367 8477447 ~ 8480465 (+)
XLOC_004527 NA non-coding upstream 1259366 8043521 ~ 8046466 (+)
XLOC_004546 NA non-coding downstream 481235 9797037 ~ 9812486 (+)
XLOC_004550 NA non-coding downstream 625331 9941133 ~ 9950489 (+)
XLOC_004556 CU459020.1 non-coding downstream 895130 10210932 ~ 10211048 (+)
XLOC_004565 CR450852.1 non-coding downstream 2327749 11643551 ~ 11643671 (+)

Expression


Co-expression Network