XLOC_004543 (dnajc9)


Basic Information

Item Value
gene id XLOC_004543
gene name dnajc9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9497646 ~ 9510403 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009037
GCAGATCTCTAAACAACATCATCTATGCAAACTCACCATTTTCTCCTCCTTTTCCGTCTTCATTCTCGCCTCGGTCTCTGTGTATTTACGCTGATCTTTTGAAGCATCGCTTGTGAGACCCGACAGAGCCTCCACATCCACAGTCATGGGTTTGCTGGATCAGTGTGAGGAGCTCTTCAAGACCTCCAATCTGTATGAAGTCCTGGGCGTCTGTAAAGAAGCTCCAGACTCGGAGATCCGACGCGGATATTATAAAGTGTCTCTGCAGGTTCATCCAGACAGAGCTCCTGGTGACCAATCAGCCACGACCAAGTTCCAGGTTCTGGGTAAGGTATATGCAGTGTTAGCAGACAAGGAACAAAGAGCGGTCTATGATGAACAAGGAATCGTGGATGAAGAGTCTGTCTCTCTTGATCAAGACCGCAACTGGGAGGAGCACTGGAGAAGATTGTTTCCCAAGATTACATTGCAAGACATCTTGGACTTCGAGAAGCAGTATAAAGGCTCAGACGAAGAAGTGGAAGACTTAAAAAGAGTGTACCTGCAACACGAAGGTGACATAGATCTGATCATGGAGTCGGCACTGTGCTGTTCTTATGAAGATGAGCCTCGCGTTAAGAATATCCTGCAGAGAGCCATTGATGCTGAAGAGGTGCCGGCCTACAAAGCCTTCACTCATGAGAGCGTCAAGAAGAAGAACATCCGTAAAAGAAAGGCGGAAAAAGAGCGCAAGGAGGCGGAGGAAATGCAGGAGGAGATGGGCTTAAACAGTGAAGACAGCCTCGTAGCTATGATAAagCAAAGACAAAAGGCTAAAGAAAATGGATTCAACTCCCTCATCTCAGATCTGGAGGCAAAATATTGCAAGAAACCAGCAGCTGGAAAGAAAG
>TCONS_00009038
TCTCTAAACAACATCATCTATGCAAACTCACCATTTTCTCCTCCTTTTCCGTCTTCATTCTCGCCTCGGTCTCTGTGTATTTACGCTGATCTTTTGAAGCATCGCTTGTGAGACCCGACAGAGCCTCCACATCCTCATGGGTTTGCTGGATCAGTGTGAGGAGCTCTTCAAGACCTCCAATCTGTATGAAGTCCTGGGCGTCTGTAAAGAAGCTCCAGACTCGGAGATCCGACGCGGATATTATAAAGTGTCTCTGCAGGTTCATCCAGACAGAGCTCCTGGTGACCAATCAGCCACGACCAAGTTCCAGGTTCTGGGTAAGGTATATGCAGTGTTAGCAGACAAGGAACAAAGAGCGGTCTATGATGAACAAGGAATCGTGGATGAAGAGTCTGTCTCTCTTGATCAAGACCGCAACTGGGAGGAGCACTGGAGAAGATTGTTTCCCAAGATTACATTGCAAGACATCTTGGACTTCGAGAAGCAGTATAAAGGCTCAGACGAAGAAGTGGAAGACTTAAAAAGAGTGTACCTGCAACACGAAGGTGACATAGATCTGATCATGGAGTCGGCACTGTGCTGTTCTTATGAAGATGAGCCTCGCGTTAAGAATATCCTGCAGAGAGCCATTGATGCTGAAGAGGTGCCGGCCTACAAAGCCTTCACTCATGAGAGCGTCAAGAAGAAGAACATCCGTAAAAGAAAGGCGGAAAAAGAGCGCAAGGAGGCGGAGGAAATGCAGGAGGAGATGG
>TCONS_00009039
AAAAAATTTGGCGCGCTCTGACAGCCATAGGAAGCTACGGCAGCTGTGTGTTGAAAAGCAGCCGGCACTTTTAAACAAGTCTGTGACCCGAGTTACTTATCTACGGCTGTGTATTCTCTCCGACAGTCATGGGTTTGCTGGATCAGTGTGAGGAGCTCTTCAAGACCTCCAATCTGTATGAAGTCCTGGGCGTCTGTAAAGAAGCTCCAGACTCGGAGATCCGACGCGGATATTATAAAGTGTCTCTGCAGGTTCATCCAGACAGAGCTCCTGGTGACCAATCAGCCACGACCAAGTTCCAGGTTCTGGGTAAGGTATATGCAGTGTTAGCAGACAAGGAACAAAGAGCGGTCTATGATGAACAAGGAATCGTGGATGAAGAGTCTGTCTCTCTTGATCAAGACCGCAACTGGGAGGAGCACTGGAGAAGATTGTTTCCCAAGATTACATTGCAAGACATCTTGGACTTCGAGAAGCAGTATAAAGGCTCAGACGAAGAAGTGGAAGACTTAAAAAGAGTGTACCTGCAACACGAAGGTGACATAGATCTGATCATGGAGTCGGCACTGTGCTGTTCTTATGAAGATGAGCCTCGCGTTAAGAATATCCTGCAGAGAGCCATTGATGCTGAAGAGGTGCCGGCCTACAAAGCCTTCACTCATGAGAGCGTCAAGAAGAAGAACATCCGTAAAAGAAAGGCGGAAAAAGAGCGCAAGGAGGCGGAGGAAATGCAGGAGGAGATGGGCTTAAACAGTGAAGACAGCCTCGTAGCTATGATAAagCAAAGACAAAAGGCTAAAGAAAATGGATTCAACTCCCTCATCTCAGATCTGGAGGCAAAATATTGCAAGAAACCAGCAGCTGGAAAGAAAGGCAAGAAAAAGTGAAAGGGTTACGACAAACAAATGCAGTCAAATTCACATTGTAAATAACAGTAAGAGGGAACATTAACAGATACCAGCCCTTTGTTAGCAATAGCAAACCTGTTCAATGCGCTCATGGATGTCCTACAGTGGATGTTCAGTGGAAATACATAATGTAACCTTTCAAGTGTTCCTGTAActtttgtatgtgtatatattatcCTGTTTCggtgtttaaatataataaactttTGATTAGTTTTAACGTC
>TCONS_00009040
GGCAGCTGTGTGTTGAAAAGCAGCCGGCACTTTTAAACAAGTCTGTGACCCGAGTTACTTATCTACGGCTGTGTATTCTCTCCGGTTTTATTCTCCTCACAGACAGTCATGGGTTTGCTGGATCAGTGTGAGGAGCTCTTCAAGACCTCCAATCTGTATGAAGTCCTGGGCGTCTGTAAAGAAGCTCCAGACTCGGAGATCCGACGCGGATATTATAAAGTGTCTCTGCAGGTTCATCCAGACAGAGCTCCTGGTGACCAATCAGCCACGACCAAGTTCCAGGTTCTGGGTAAGGTATATGCAGTGTTAGCAGACAAGGAACAAAGAGCGGTCTATGATGAACAAGGAATCGTGGATGAAGAGTCTGTCTCTCTTGATCAAGACCGCAACTGGGAGGAGCACTGGAGAAGATTGTTTCCCAAGATTACATTGCAAGACATCTTGGACTTCGAGAAGCAGTATAAAGGCTCAGACGAAGAAGTGGAAGACTTAAAAAGAGTGTACCTGCAACACGAAGGTGACATAGATCTGATCATGGAGTCGGCACTGTGCTGTTCTTATGAAGATGAGCCTCGCGTTAAGAATATCCTGCAGAGAGCCATTGA
>TCONS_00009041
TATTTGtgtgtaaataatattaaaaagactTGCATGAGAGGTATTTGTTTTAGTTAAGATATCAGTGAATGACTTGCAGGTTTTATTCTCCTCACAGACAGTCATGGGTTTGCTGGATCAGTGTGAGGAGCTCTTCAAGACCTCCAATCTGTATGAAGTCCTGGGCGTCTGTAAAGAAGCTCCAGACTCGGAGATCCGACGCGGATATTATAAAGTGTCTCTGCAGGTTCATCCAGACAGAGCTCCTGGTGACCAATCAGCCACGACCAAGTTCCAGGTTCTGGGTAAGGTATATGCAGTGTTAGCAGACAAGGAACAAAGAGCGGTCTATGATGAACAAGGAATCGTGGATGAAGAGTCTGTCTCTCTTGATCAAGACCGCAACTGGGAGGAGCACTGGAGAAGATTGTTTCCCAAGATTACATTGCAAGACATCTTGGACTTCGAGAAGCAGTATAAAGGCTCAGACGAAGAAGTGGAAGACTTAAAAAGAGTGTACCTGCAACACGAAGGTGACATAGATCTGATCATGGAGTCGGCACTGTGCTGTTCTTATGAAGATGAGCCTCGCGTTAAGAATATCCTGCAGAGAGCCATTGATGCTGAAGAGGTGCCGGCCTACAAAGCCTTCACTCATGAGAGCGTCAAGAAGAAGAACATCCGTAAAAGAAAGGCGGAAAAAGAGCGCAAGGAGGCGGAGGAAATGCAGGAGGAGATGGGCTTAAACAGTGAAGACAGCCTCGTAGCTATGATAAag

Function

symbol description
dnajc9 Predicted to enable heat shock protein binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; corneal epithelial cell; head; and immature eye. Orthologous to human DNAJC9 (DnaJ heat shock protein family (Hsp40) member C9).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031072 heat shock protein binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040718-130 Predicted to enable heat shock protein binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; corneal epithelial cell; head; and immature eye. Orthologous to human DNAJC9 (DnaJ heat shock protein family (Hsp40) member C9).

Ensembl:

ensembl_id ENSDARG00000031293

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009037 False 890 mRNA 0.47 6 9497646 9510144
TCONS_00009038 False 752 mRNA 0.48 5 9497651 9506163
TCONS_00009039 False 1132 mRNA 0.44 6 9499742 9510403
TCONS_00009040 False 605 mRNA 0.47 4 9499780 9505770
TCONS_00009041 True 757 mRNA 0.46 4 9499993 9506201

Neighbor

gene id symbol gene type direction distance location
XLOC_004542 NA coding upstream 47915 9443721 ~ 9449731 (+)
XLOC_004541 kcnh6b coding upstream 150319 9342502 ~ 9347327 (+)
XLOC_004540 kcnh6b coding upstream 161415 9320446 ~ 9336231 (+)
XLOC_004539 taco1 coding upstream 181844 9305832 ~ 9315802 (+)
XLOC_004538 pimr46 coding upstream 245595 9250107 ~ 9252051 (+)
XLOC_004544 p4ha1a coding downstream 31721 9542124 ~ 9585670 (+)
XLOC_004545 ppp1r9bb coding downstream 192769 9703172 ~ 9777329 (+)
XLOC_004546 NA coding downstream 286634 9797037 ~ 9812486 (+)
XLOC_004547 rundc3ab coding downstream 307037 9817440 ~ 9840819 (+)
XLOC_004548 fam117ab coding downstream 339073 9849476 ~ 9876076 (+)
XLOC_004536 NA non-coding upstream 526614 8968317 ~ 8971032 (+)
XLOC_004533 NA non-coding upstream 940487 8556636 ~ 8557159 (+)
XLOC_004532 NA non-coding upstream 962731 8527568 ~ 8534915 (+)
XLOC_004531 NA non-coding upstream 1017181 8477447 ~ 8480465 (+)
XLOC_004550 NA non-coding downstream 430730 9941133 ~ 9950489 (+)
XLOC_004556 CU459020.1 non-coding downstream 700529 10210932 ~ 10211048 (+)
XLOC_004565 CR450852.1 non-coding downstream 2133148 11643551 ~ 11643671 (+)
XLOC_004568 NA non-coding downstream 2904853 12415256 ~ 12415835 (+)

Expression


Co-expression Network