XLOC_004544 (p4ha1a)


Basic Information

Item Value
gene id XLOC_004544
gene name p4ha1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9542124 ~ 9585670 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009042
ATCTTTCACAGCGAACCGACCGACCGCTGAGGAGTGAAAGAGGGACGCGAGCTAACCGAACAACATTGATCGATTTTGCTTTATCGACTCATTCAAGAAGCGACAGTTGTGTGTGGCAAAGTGTGATGATGGGAGTTAGGAGTGTGTGCTGTTTTTTACTCATCTCTCTGCTAAAGTCTTCCTCTGCTCACAGCGACTTCTTCACTTCCATTGgtcatATGACAGATCTGTTGTTCACAGAAAAAGACCTGGTGACATCATTGAAAGACTACATTAAAGCAGAGGAGAGCAAACTAGAGCAAGTTAAACAGTGGGCAGAGAAGCTTGATGCTTTAACAGCCACAGCCGTCCAGGACCCAGAGGGCTTTTTGGGTCATCCTGTCAATGCCTTTAAACTCATGAAGAGACTAAACACAGAATGGGGTGAAGTGGAAGATCTAGTGCTCAAGGACATGTCTGATGgctttaTCTCAAACCTGACCATTCAGCGCCAGTACTTCCCCAATGATGAAGACCAGAACGGTGCAGCGAAAGCCCTCCTCCGACTGCAGGACACATATAAACTGGACACACAGACCATCTCTTCTGGAGACCTGCCTGgtgTTAATACAGGTCTGCCATATAAAAGCACCCTGACGGTAGAGGACTGTTTTGAACTAGGAAAAATTGCCTACTCTGACGCAGACTACTATCACACGGAGCTGTGGATGGCCCAGGCGCTCAAGCAGCTGGATGAAGGAGAAGAATCCAGCGTTGAGATTGCCACCGCTCTGGATTACCTCAGTTACTCTGTCTACCAACAGGGGGAGCTGGAGAGAGCTCTGGAATATACTAAGAGACTGCTTACTGTGGAGCCGGAGCACCAGCGAGCTCTTGGGAACCTCAAATATTTTGACTACCAGCTGGCCAAACAGAAGAAGGCAGAGAAGGAGCAGAGCACCAAGGAAGAGAGCAAGAAGGAGCAAGAAACGTCAGATGGGAAGAAGGAATATCTCCCGGAGAAGAGGAAATATGAGAAGCTGTGTAGAGGAGAAGGACTCAAAATGACTCCTCGGAGACAGAAGCATTTGTTCTGCCGTTACTTCAATGGTAACAGACATCCATTTTACACAATTGGGCCAGTGAAACAAGAAGACGAATGGGACCGTCCCCGAATCATCCGTTATCATGAGATAATAACAGAACAAGAAATAGAGAAAATCAAGGAGCTCTCCAAACCAAGGCTGCGCCGAGCCACCATCTCCAACCCCATTACTGGTGTCCTAGAGACTGCACACTATCGCATCAGTAAAAGTGCGTGGTTGGCGGCCTATGAGCATCCGGTTGTGGATCGCATCAATCAGCGCATTGAAGACATCACAGGCCTCAATGTCAAAACCGCAGAAGAGTTACAGGTGGCGAATTATGGTGTTGGAGGACAATATGAGCCCCATTTTGACTTTGGACGGAAAGATGAACCAGATGCCTTTAAAGAGCTGGGCACAGGGAATCGCATAGCAACCTGGCTCTTCTACATGAGTGATGTAGCAGCAGGGGGAGCCACTGTCTTTCCAGAAGTAGGAGCTGCAGTAAAGCCACTGAAGGGCACCGCAGTGTTCTGGTATAATCTGTTTCCCAGTGGAGAAGGAGATTACAGCACGAGACACGCAGCCTGTCCAGTACTGGTGGGAAACAAGTGGGtGTCAAATAAATGGATCCACGAGCGAGGTCAGGAATTCAGGAGACCCTGCGGCCTGAAAGAGACCGACTGACCAACGCTGTCCACCATTTTTCTCATTCACTCCTTCAGACTCTGAAAACACTCCTGCTCTTCATTTCCTCTGTCCACAGCAGCAACACTAATTTTCAGtgaagagtgtgtatgtgtgtgcgttttgTGACATCAGGACACAAAATTGCATAATGACATgagtatgacacaggtattataCAGAGGAAGTGACTTATGAGACCATGTACCCGTTTTTCAAAAGGCTCATAAATCATACAGAAAGAACCAGAATTATTTTTGTGGAAGTAAAACGTGCACGCTGTTTCCTGTGAGAGAGACTTGGGCTGGGGTAGGGTGATAGATATAGGTTGAAGAGTATAAAAACAGTGGAAAGCTatgaaatgtccccacaattcacaaaagcaAGCAAGTTTGTGTGTACTTGTATATATGGTTTACGAGCAGGGTGGAAATTACAGGAGTGTTTGGGGGGGATTAACCCCTCCAGTTAACACGTGTAGaatgtca
>TCONS_00009044
ATGATGGGAGTTAGGAGTGTGTGCTGTTTTTTACTCATCTCTCTGCTAAAGTCTTCCTCTGCTCACAGCGACTTCTTCACTTCCATTGgtcatATGACAGATCTGTTGTTCACAGAAAAAGACCTGGTGACATCATTGAAAGACTACATTAAAGCAGAGGAGAGCAAACTAGAGCAAGTTAAACAGTGGGCAGAGAAGCTTGATGCTTTAACAGCCACAGCCGTCCAGGACCCAGAGGGCTTTTTGGGTCATCCTGTCAATGCCTTTAAACTCATGAAGAGACTAAACACAGAATGGGGTGAAGTGGAAGATCTAGTGCTCAAGGACATGTCTGATGgctttaTCTCAAACCTGACCATTCAGCGCCAGTACTTCCCCAATGATGAAGACCAGAACGGTGCAGCGAAAGCCCTCCTCCGACTGCAGGACACATATAAACTGGACACACAGACCATCTCTTCTGGAGACCTGCCTGgtgTTAATACAGGTCTGCCATATAAAAGCACCCTGACGGTAGAGGACTGTTTTGAACTAGGAAAAATTGCCTACTCTGACGCAGACTACTATCACACGGAGCTGTGGATGGCCCAGGCGCTCAAGCAGCTGGATGAAGGAGAAGAATCCAGCGTTGAGATTGCCACCGCTCTGGATTACCTCAGTTACTCTGTCTACCAACAGGGGGAGCTGGAGAGAGCTCTGGAATATACTAAGAGACTGCTTACTGTGGATGGGAAGAAGGAATATCTCCCGGAGAAGAGGAAATATGAGAAGCTGTGTAGAGGAGAAGGACTCAAAATGACTCCTCGGAGACAGAAGCATTTGTTCTGCCGTTACTTCAATGGTAACAGACATCCATTTTACACAATTGGGCCAGTGAAACAAGAAGACGAATGGGACCGTCCCCGAATCATCCGTTATCATGAGATAATAACAGAACAAGAAATAGAGAAAATCAAGGAGCTCTCCAAACCAAGGCTGCGCCGAGCCACCATCTCCAACCCCATTACTGGTGTCCTAGAGACTGCACACTATCGCATCAGTAAAAGGCGCGCCACCGTTCATGACCCTCAAACTGGCAAACTCACCACCGCCCAGTACAGAGTCTCCAAGAGTGCGTGGTTGGCGGCCTATGAGCATCCGGTTGTGGATCGCATCAATCAGCGCATTGAAGACATCACAGGCCTCAATGTCAAAACCGCAGAAGAGTTACAGGTGGCGAATTATGGTGTTGGAGGACAATATGAGCCCCATTTTGACTTTGGACGGAAAGATGAACCAGATGCCTTTAAAGAGCTGGGCACAGGGAATCGCATAGCAACCTGGCTCTTCTACATGAGTGATGTAGCAGCAGGGGGAGCCACTGTCTTTCCAGAAGTAGGAGCTGCAGTAAAGCCACTGAAGGGCACCGCAGTGTTCTGGTATAATCTGTTTCCCAGTGGAGAAGGAGATTACAGCACGAGACACGCAGCCTGTCCAGTACTGGTGGGAAACAAGTGGGtGTCAAATAAATGGATCCACGAGCGAGGTCAGGAATTCAGGAGACCCTGCGGCCTGAAAGAGACCGACTGA
>TCONS_00009043
ATGATGGGAGTTAGGAGTGTGTGCTGTTTTTTACTCATCTCTCTGCTAAAGTCTTCCTCTGCTCACAGCGACTTCTTCACTTCCATTGgtcatATGACAGATCTGTTGTTCACAGAAAAAGACCTGGTGACATCATTGAAAGACTACATTAAAGCAGAGGAGAGCAAACTAGAGCAAGTTAAACAGTGGGCAGAGAAGCTTGATGCTTTAACAGCCACAGCCGTCCAGGACCCAGAGGGCTTTTTGGGTCATCCTGTCAATGCCTTTAAACTCATGAAGAGACTAAACACAGAATGGGGTGAAGTGGAAGATCTAGTGCTCAAGGACATGTCTGATGgctttaTCTCAAACCTGACCATTCAGCGCCAGTACTTCCCCAATGATGAAGACCAGAACGGTGCAGCGAAAGCCCTCCTCCGACTGCAGGACACATATAAACTGGACACACAGACCATCTCTTCTGGAGACCTGCCTGgtgTTAATACAGGTCTGCCATATAAAAGCACCCTGACGGTAGAGGACTGTTTTGAACTAGGAAAAATTGCCTACTCTGACGCAGACTACTATCACACGGAGCTGTGGATGGCCCAGGCGCTCAAGCAGCTGGATGAAGGAGAAGAATCCAGCGTTGAGATTGCCACCGCTCTGGATTACCTCAGTTACTCTGTCTACCAACAGGGGGAGCTGGAGAGAGCTCTGGAATATACTAAGAGACTGCTTACTGTGGAGCCGGAGCACCAGCGAGCTCTTGGGAACCTCAAATATTTTGACTACCAGCTGGCCAAACAGAAGAAGGCAGAGAAGGAGCAGAGCACCAAGGAAGAGAGCAAGAAGGAGCAAGAAACGTCAGATGGGAAGAAGGAATATCTCCCGGAGAAGAGGAAATATGAGAAGCTGTGTAGAGGAGAAGGACTCAAAATGACTCCTCGGAGACAGAAGCATTTGTTCTGCCGTTACTTCAATGGTAACAGACATCCATTTTACACAATTGGGCCAGTGAAACAAGAAGACGAATGGGACCGTCCCCGAATCATCCGTTATCATGAGATAATAACAGAACAAGAAATAGAGAAAATCAAGGAGCTCTCCAAACCAAGGCTCAGGCGCGCCACCGTTCATGACCCTCAAACTGGCAAACTCACCACCGCCCAGTACAGAGTCTCCAAGAGTGCGTGGTTGGCGGCCTATGAGCATCCGGTTGTGGATCGCATCAATCAGCGCATTGAAGACATCACAGGCCTCAATGTCAAAACCGCAGAAGAGTTACAGGTGGCGAATTATGGTGTTGGAGGACAATATGAGCCCCATTTTGACTTTGGACGGAAAGATGAACCAGATGCCTTTAAAGAGCTGGGCACAGGGAATCGCATAGCAACCTGGCTCTTCTACATGAGTGATGTAGCAGCAGGGGGAGCCACTGTCTTTCCAGAAGTAGGAGCTGCAGTAAAGCCACTGAAGGGCACCGCAGTGTTCTGGTATAATCTGTTTCCCAGTGGAGAAGGAGATTACAGCACGAGACACGCAGCCTGTCCAGTACTGGTGGGAAACAAGTGGGtGTCAAATAAATGGATCCACGAGCGAGGTCAGGAATTCAGGAGACCCTGCGGCCTGAAAGAGACCGACTGA

Function

symbol description
p4ha1a Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human P4HA1 (prolyl 4-hydroxylase subunit alpha 1).

GO:

id name namespace
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-91 Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human P4HA1 (prolyl 4-hydroxylase subunit alpha 1).

Ensembl:

ensembl_id ENSDARG00000033537

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009042 False 2239 mRNA 0.47 15 9542124 9585670
TCONS_00009044 False 1569 mRNA 0.49 15 9551667 9585182
TCONS_00009043 True 1626 mRNA 0.49 14 9551667 9585182

Neighbor

gene id symbol gene type direction distance location
XLOC_004543 dnajc9 coding upstream 31721 9497646 ~ 9510403 (+)
XLOC_004542 NA coding upstream 92393 9443721 ~ 9449731 (+)
XLOC_004541 kcnh6b coding upstream 194797 9342502 ~ 9347327 (+)
XLOC_004540 kcnh6b coding upstream 205893 9320446 ~ 9336231 (+)
XLOC_004539 taco1 coding upstream 226322 9305832 ~ 9315802 (+)
XLOC_004545 ppp1r9bb coding downstream 117502 9703172 ~ 9777329 (+)
XLOC_004546 NA coding downstream 211367 9797037 ~ 9812486 (+)
XLOC_004547 rundc3ab coding downstream 231770 9817440 ~ 9840819 (+)
XLOC_004548 fam117ab coding downstream 263806 9849476 ~ 9876076 (+)
XLOC_004549 ndufa4 coding downstream 294823 9880493 ~ 9884326 (+)
XLOC_004536 NA non-coding upstream 571092 8968317 ~ 8971032 (+)
XLOC_004533 NA non-coding upstream 984965 8556636 ~ 8557159 (+)
XLOC_004532 NA non-coding upstream 1007209 8527568 ~ 8534915 (+)
XLOC_004531 NA non-coding upstream 1061659 8477447 ~ 8480465 (+)
XLOC_004550 NA non-coding downstream 355463 9941133 ~ 9950489 (+)
XLOC_004556 CU459020.1 non-coding downstream 625262 10210932 ~ 10211048 (+)
XLOC_004565 CR450852.1 non-coding downstream 2057881 11643551 ~ 11643671 (+)
XLOC_004568 NA non-coding downstream 2829586 12415256 ~ 12415835 (+)

Expression


Co-expression Network