XLOC_004546


Basic Information

Item Value
gene id XLOC_004546
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9797037 ~ 9812486 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010896
aattactatagtatttttcaggTGTTTGCATTACATTGGCTCTATATACGCAGACAGTCACGGTAACTACATATTCAGCATCAGTATCTTGCTAATAGCCTAAATATTATCAGCCATAAACTGAACCTAAAATAAGTGGATTACCTTGAGACATGTTGGGAttaaaagcaaaattaaatatTCCTGAAATTTCGGTGATGAGTGGAAAAACCTAAACAGAAAGATAAAGGTTGCAGGTTTCCTGAAGTTCCAGACACTGGTCTGACTTTCATTCATGTGAGGAGATATTAAAGTATGCTTGCCATCTCTGGTGGTAGAAAAGAAATGTCTTAACAGGATGATATGAGAATGAggaggtgtttctgtgtggaaagTTAACCAAAGGTcgattataataaatgtttaagtatCAAACCTTCAAGACATCCAGGACATCATGACTTCTGCAACGACTTCACAAAGAAGAGGATGGCAGACTGTGGCAGAAGGTAGAGAAGTCACAAACAAATTGACGGCACGCTACATGAGTGAAGAAGCACTTCGGATGGTACTGGACAGCGACGGATAATTTACTTTCTCCTCAGAAGAAGAGTGCGACTGATGACCAACgcaaacattttgaagaatgtttagaCCCAGCAGAGGATAAAATCCCTGTGGAatgtgaaaacaacaGCGGTAAAGGACCAGTGGCAAAGAAAGCGAAAGCAATGAAGTTGCCCACTCAGTCATGGAAAACAGAGACTGATGCTGCATGACTCCACAGGCTCTGAGATTCCTTCCTGTACATGAACCTGGACAACAGCTAAGACCATGTGATGCTcatttcaaaatgctttttttgtttcaaaTCAAATAATTTGTCAATAAACCCATTTcatcaattataaatgaatagCAATGTTTTTTGCATGTGTTGGtgcacacacaagaaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010896 True 936 lncRNA 0.39 3 9797037 9812486

Neighbor

gene id symbol gene type direction distance location
XLOC_004545 ppp1r9bb coding upstream 19708 9703172 ~ 9777329 (+)
XLOC_004544 p4ha1a coding upstream 211367 9542124 ~ 9585670 (+)
XLOC_004543 dnajc9 coding upstream 286634 9497646 ~ 9510403 (+)
XLOC_004542 NA coding upstream 347306 9443721 ~ 9449731 (+)
XLOC_004541 kcnh6b coding upstream 449710 9342502 ~ 9347327 (+)
XLOC_004547 rundc3ab coding downstream 4954 9817440 ~ 9840819 (+)
XLOC_004548 fam117ab coding downstream 36990 9849476 ~ 9876076 (+)
XLOC_004549 ndufa4 coding downstream 68007 9880493 ~ 9884326 (+)
XLOC_004550 NA coding downstream 128647 9941133 ~ 9950489 (+)
XLOC_004551 slc4a1b coding downstream 241366 10053852 ~ 10100504 (+)
XLOC_004536 NA non-coding upstream 826005 8968317 ~ 8971032 (+)
XLOC_004533 NA non-coding upstream 1239878 8556636 ~ 8557159 (+)
XLOC_004532 NA non-coding upstream 1262122 8527568 ~ 8534915 (+)
XLOC_004531 NA non-coding upstream 1316572 8477447 ~ 8480465 (+)
XLOC_004556 CU459020.1 non-coding downstream 398446 10210932 ~ 10211048 (+)
XLOC_004565 CR450852.1 non-coding downstream 1831065 11643551 ~ 11643671 (+)
XLOC_004568 NA non-coding downstream 2602770 12415256 ~ 12415835 (+)
XLOC_004569 BX548041.1 non-coding downstream 2800849 12613335 ~ 12613451 (+)

Expression


Co-expression Network