XLOC_004550


Basic Information

Item Value
gene id XLOC_004550
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9941133 ~ 9950489 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010897
TGCGATCTTTTAAGTTTATTATCTCTCGTTTGTAATAGTAAGCGCATCAAACCTACTTTAGGAATTCTAGTAAATTCACATTTATATAATACAGTGTACATAACAGTAAATATGTGCAATATACAGTATCGTTCCTGCAGATCTTTTCCAAATAAACCCAATGAAACTTCTTTTCATCCTCTCGTCCTCCACACACTCACAAAGTCAGTGAAAAAGTCCATGAAACACTCCGTGTTCCAACAACAACAAGTATGCCTTTGGCTTACTGTCAGAAAGCAATGCATCAGATTCATCCAGAGATATGCGCTCTGATACTTTGCAACACCATGGAAATATTCTATAGATGATATGAAACCAAAACTGCACATCTGTCAAACAAAAAGTGGATTATTTTATACAAGAAAATCGAGGGCAATGTAAGGTGTAAATTTGTGTGGGTTTGACTTCTCATACGGCAGATGTGGCAGTTGGTTTGACAATGATGCTTTGCGCAATATCCTCTCTGTTGATCTTCTTCAGAGCTGTGCAAAGCGTATCAATGTTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010897 True 545 lncRNA 0.37 2 9941133 9950489

Neighbor

gene id symbol gene type direction distance location
XLOC_004549 ndufa4 coding upstream 56807 9880493 ~ 9884326 (+)
XLOC_004548 fam117ab coding upstream 65057 9849476 ~ 9876076 (+)
XLOC_004547 rundc3ab coding upstream 100314 9817440 ~ 9840819 (+)
XLOC_004546 NA coding upstream 128647 9797037 ~ 9812486 (+)
XLOC_004545 ppp1r9bb coding upstream 163804 9703172 ~ 9777329 (+)
XLOC_004551 slc4a1b coding downstream 103363 10053852 ~ 10100504 (+)
XLOC_004552 si:dkeyp-118b1.2 coding downstream 165475 10115964 ~ 10125777 (+)
XLOC_004553 smarcd2 coding downstream 183877 10134366 ~ 10160941 (+)
XLOC_004554 psmc5 coding downstream 213096 10163585 ~ 10175487 (+)
XLOC_004555 si:ch73-103l1.2 coding downstream 228963 10179452 ~ 10193551 (+)
XLOC_004542 NA non-coding upstream 491402 9443721 ~ 9449731 (+)
XLOC_004536 NA non-coding upstream 970101 8968317 ~ 8971032 (+)
XLOC_004533 NA non-coding upstream 1383974 8556636 ~ 8557159 (+)
XLOC_004532 NA non-coding upstream 1406218 8527568 ~ 8534915 (+)
XLOC_004556 CU459020.1 non-coding downstream 260443 10210932 ~ 10211048 (+)
XLOC_004565 CR450852.1 non-coding downstream 1693062 11643551 ~ 11643671 (+)
XLOC_004568 NA non-coding downstream 2464767 12415256 ~ 12415835 (+)
XLOC_004569 BX548041.1 non-coding downstream 2662846 12613335 ~ 12613451 (+)
XLOC_004579 BX649204.1 non-coding downstream 3506748 13457237 ~ 13457356 (+)

Expression


Co-expression Network